RNA id: XM_022675297.1


Basic Information

Item Value
RNA id XM_022675297.1
length 4845
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC103026961
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 6682180 ~ 6699512 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTGAGATGGTTCCAGCATGGTGTTGCAGTTCAGTCGGGTGAAACTCTGCAACTGTGATTCCAGAAACTCCAGTAAAGGATTCGAGGAGCAGAAGATCTGGATTTAATCAGCAGAAGGAACACAAACAGATGAACTGGTGAAGAAATGAATGCCATCCTGTTCCAGCTCATGTCCAGCTAGTAAGAAATGAATGCCATCCTGTTCCAAGTCATGTCCAGCTAGGAAGGTAGGAAATATGACGTCCAGAAGAATCTCCAAAACTACTACAGCATGCAGAAGCGTGGAGAAGAGTACAGGCAAGGAGAAAACCCatcagtgctcagactgtgggaagagttttactcaactgAGTAACctgaaaaaacaccagcgcattcacactggagagaaaccgtatcactgttcagagtgtgggaagagtttcaATCATCAGAGTAATCTGAAAAAACACCAACGCATTCACAATGGAGTAAAACCATATCAATGCTCAGACTGTGGCAAGAGCTTTACTGAACAAAGTGAACTCAtaagacaccagcgcattcacactggagagaaaccatttcactgctcagactgtgggaagagttttacgcAAAGGTATCATCTTGTAAGACACCAGCtagttcacactggagagaaaccatttcACTGCACACAGTGTAGCAAGAgctttactgaacagagtaaactcaaaagacaccagcgcgttcacactggagagaaaccgtattactgcacAGTCTGTGGGAAGACCTTTACTCAACAGGGTACACTCCGAAGACACCAACGCCTTCACATTGGAGAAAAAACGTATCACTGTTTagactgtgggaggagcttTAATCGACAGAGTAATCTGAAAAAACACCAGCACCTTCACACTAAGGTAAAACCGTATGTCTGGTCAAAGTGTGGGAGGAGTTTCATTAAACAGAGTGACCTCAGAAAACACCAACGTATTCACACTGAAGAAAAACCGTATCAcggctcagactgtgggaagaatttTTCTGAACAGTGTAATCTCAATAGACACCaatgcattcacactggagtaaATATGTAtgactgctcagactgtgggaagagttttactgaccAGACTCAACTCCAAAAACACCAAATCATTCACACTGACGTTAAACCGTATctgtgctcagagtgtgggaagagctttactGAACAGAATGATCTCGTAagacaccagcgcgttcacactggagagaaaccatatcactgcatACAGTGTAGCAAGAGCTTTACTGATCAAAGTAAACTCAAAAGACACctgcgcgttcacactggagagaaaccattttACTGCACAGTCTGTGGAAAGAATTTTAATGATAAGAGTACACTCCGAAGACACCAACGCCTTCACACTGGAGTTAAACCACATCAATGCTCATATTGTAGCAAGAgctttactgaacagagtaaactcaaaagacaccagcgtgttcacactggagagaaaccgtatcactgctcagactgtgggaagagttttactgggCAGAGTAAACTTCAAACCCACCAAATCATTCACACTgaagagaaaccgtatcactgttcagcatgtgggaagagctttaatcGACAGAGTAATCTGAAAAAACACCAGcgtattcacactggagagaaaccgtattactgcacAGTCTGTGAGAAGAGATTTACTCAAAAGTTTGCTCTCATAAGACACCAACACATTCACACTGAAGTAAAACCGTATGTCTGCTCaaagtgtgggaagagtttcaTTAAACAGAGTGACCTcagaaaacaccagcgcattcacactgcagagaaaccgtatcactgcacaaactgtgggaagaatttttctgaacagagtaatctcaataGACACCAACTCATTCACACTGGAGTAAATCTGTAtgactgctcagactgtgggaagagttttactgaccAGACTCAACTCCAAAAACACCAAATCATTCACACTGACGTTAAACCGCATctgtgctcagagtgtggggaGAGCTTTACTGAACAGAGTCAACTCCAAGGACACCAACTCATTCACACTGACGTTAAACCGTATctgtgctcagagtgtggggaGAGCTTTACTGAACAGAGTCAACTCCAAGGACACCAACTCATTCACACTGACGTTAAACCGCATCTATGCTCAGAGTGTGGGGAGAGCTTTACTGAACAGAGTCAACTCCAAAAACACCAAATCATTCACACTGACGTTAAACCGCATCTATGCTCAGAGTGTGGGGAGAGCTTTACTGAACAGAGTCAACTCCAAAAACACCAAATCATTCACACTGACGTTAAACCGCATCTATGCTCAGAGTGTGGGGAGAGCTTTACTGAACAGAGTCAACTCCGGAAGCACCAattcattcacactggagagaaaccgtttcactgctcagactgtgggaggagttttacgCAAAGGTCTTGTCTCGTAagacaccagcgcgttcacactggagagaaaccgtatcactgcatACAGTGTAGCAAGAGCTTTACTGATCAAAGTAAACTCAAAagacaccagcgcgttcacactggagagaaaccattttACTGCACAGTCTGTGGAAAGAATTTTAATGATCAGAGTACACTCCGAAGACACCAACGCCTTCACACTGGAgggaaaccgtatcactgctcagactgtgggaagagttttactgggCAGAGTGACCTTCACACACACCAAATCATTCACACTGAAGAGAAAACGTATCACTGTTCAGCatgtgggaagagctttaatcGACAGAGTAATCTGAAAAAACACCAGCGTATTCACAATGGAGAGAAActgtatcactgttcagactgtgggaagaaatTTACTGAACAGAATAATCTCAAAAGACACCAACACATTCACAGTGGAGTAAAACCACATCAATGCTCATATTGTAGCAAGAGCTTTACTGCACAAAGTGAACTCAcaagacaccagcgcattcacactggagagaaaccatttcACTGCACACAGTGTAGCAAGAgctttactgaacagagtaaactcaaaagacaccagcgcgttcacactggagagaaaccgtatcactgttcagagtgtgggaagagtttcaATCATCAGAGTAATCTGAAAAAacaccaacgcattcacactggagtaaAACCATATCAATGCTCAGACTGTAGCAAGAGCTTTACTGAACAAAGTGAACTCAtaagacaccagcgcattcacactggagagaaaccgtttaactgctcagactgtgggaagagttttacacAAAGGAATCATCTCGTAAGACACCAGCtagttcacactggagagaaaccatttcACTGCACACAGTGTAGCAAGAgctttactgaacagagtaaactcaaaagacaccagcgcgttcacactggagagaaaccgtattactgcacAGTCTGTGGGAAGAGATTTACTGATCAGGGTACACTCCGAAGACACCAACGCCTTCACACTgaagagaaaccgtatcactgctcagactgtgggaagagttttaatcgacaGAGTAATCTGAAAAAACACCAGCGTATTCACAATGGAGAGAAACTATTtaactgctcagactgtgggaagagttttatgcAAAGGTCTTGTCTTGTAAGACACCAGCtagttcacactggagaaaaaccatTTCACTGCACACAGTGTAGCAAGAgctttactgaacagagtaaactcaaaagacaccagcgcgttcacactggagagaaaccaaaGGAGCAACAATAAGAGGCGATCTCAATCCTGATGAAGTGATTCATTGTCCCGTTTGTTTGATACTATATCATCCTGTTCCTTCCACTCCTTACAGAGTCAGGGACGTACATGCTGGGAGTTGCAGTTTTAGTTGTGTAGTTCAGAGTCTGGatcaggcagactgacagcaccAGGACTGACAATTAGTCCTGCACATCAGCTTATTCATTTCCTCCCATAAACTGACACTTCTGCTCCTTCTACAACATGAACTCTTAAGATTCAGCTCACCCACAGATGTGCTGAtattttcctcagaattgactGGTATAATTCTACATTCATTGTTCCATTGTTCTAAGCCATGCTCAACAAATGGCCCAAGTGTGTATACTGATACTtccgccaccatgtttcacagatgcaATAAGGTGTTTgtgctggaatgcagtgtttcctTCTAAACATTACACTTCTGATGTAAACCAGATGTGTCACAGATTTTGACCAGTAGGGTAGTAACAATCGTGTTCAGATCTTGTATCTCAGCAAATTATCTAAAGATTTAGAGATTTAAAGAACATTGTCCCTTTTGTTTGATTCTACAGCTCTaaaaagttacccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcataaaataaCTGTGAAAGCTGAaagctctgtgttttttttttttagttcagccatttttttatttttttggagctTGAGGAAGATGTTGTCTTACAGAGAGACCTATGTATATAACATGTCCACCAATTAAGCATACCCTTGTATGAGTGTATTTAAACCAATATTCGTTTGGTTTAATGTCTGATTATGTTactttttaaccctttttattgatttggtgtatttttttttttagtttagttctttgCATTTGCTTACTAAGTTTATTAACTagtttatttctgcatttgtttgtAAATTTTTTCTTTTCCAGTTTTCTACTGgccttgttgttgttgttgttttacatTGTTAACTTGTAAATTGAGATTTGAAGTTGTCTTACAAATgccaaaatgttaataaaagcaTATTAAGGATCATATTCATAATGACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147642 lncRNA upstream 65317 6615447 ~ 6616863 (+) True G109318
TU147591 lncRNA upstream 83692 6595157 ~ 6598488 (+) True G109278
TU147582 lncRNA upstream 202815 6421247 ~ 6479365 (+) True G109269
TU147564 lncRNA upstream 362082 6318707 ~ 6320098 (+) True G109261
TU147550 lncRNA upstream 433164 6248588 ~ 6249016 (+) True G109249
TU147691 lncRNA downstream 31632 6731144 ~ 6866913 (+) True rims4
TU147696 lncRNA downstream 44949 6744461 ~ 6756941 (+) True G109341
TU147697 lncRNA downstream 44949 6744461 ~ 6756941 (+) False G109341
TU147723 lncRNA downstream 245253 6944765 ~ 6985492 (+) False blcap
TU147752 lncRNA downstream 334878 7034390 ~ 7052796 (+) False G109381
XM_022675290.1 mRNA upstream 74876 6350401 ~ 6607304 (+) True LOC103034740
XM_007258495.3 mRNA upstream 349612 6327372 ~ 6332568 (+) True LOC103027549
XM_007258497.3 mRNA upstream 474569 6204164 ~ 6207611 (+) True LOC103028186
XM_007258499.3 mRNA upstream 487539 6181466 ~ 6194641 (+) True ergic3
XM_007258500.3 mRNA upstream 487539 6181466 ~ 6194641 (+) False ergic3
XM_007258492.3 mRNA downstream 33771 6733283 ~ 6741325 (+) True tomm34
XM_022675306.1 mRNA downstream 74664 6774176 ~ 6810258 (+) False rims4
XM_007258487.2 mRNA downstream 223038 6922550 ~ 6928741 (+) True psmf1
XM_007258486.2 mRNA downstream 245264 6944776 ~ 6947611 (+) False blcap
XM_022675061.1 mRNA downstream 296258 6995770 ~ 7041534 (+) True LOC103032809
TU147548 other upstream 427123 6253210 ~ 6255057 (+) False G109248
TU147549 other upstream 427123 6253210 ~ 6255057 (+) True G109248
TU147542 other upstream 515518 6164599 ~ 6166662 (+) True G109242
TU147232 other upstream 1372423 5306050 ~ 5309757 (+) True G108999
TU147130 other upstream 1620329 5056578 ~ 5061851 (+) False LOC103029387
TU147722 other downstream 245253 6944765 ~ 6947602 (+) True blcap
TU147724 other downstream 245253 6944765 ~ 6970579 (+) False blcap
TU147963 other downstream 568359 7267871 ~ 7269592 (+) True G109527
TU147984 other downstream 742457 7441969 ~ 7448990 (+) False gbx2
TU148012 other downstream 997637 7697149 ~ 7699958 (+) False LOC103043571

Expression Profile