RNA id: TU5801


Basic Information

Item Value
RNA id TU5801
length 783
lncRNA type inter_gene
GC content 0.51
exon number 6
gene id G4277
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16679405 ~ 16681219 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAATTGTCTGCCCGAGCACAGTAGCCAGTGATGTAGAACTTGCAGAGCTCTTTCTTCTTAGGCAATTCTATGTCATGGCTGAAGTTGCAGTGCTCCCCCCAGGTGCAACGACCCTCAATGTAGTACTTGCAGATGGCCTTGCCCTTCTTGTCGTGATAATCATGCTTCCTCTGGCCACCTCCTCCATCCCCCATGTCCATatctccatcatcatcatcatagcCTTGATCTCCTCCACGACCCCTTCCTCGATTTCTACCTCTGCCTCGGTTCATGCCTCGCATTCCTTTACCCCGTCCTCGACCTCTTCCACCACGAATACCTCGTCCTCTGTCCTTAGACTTCCTGTACTGGTTCAGTTCTTTTGAgtaatcatcataatcatcatcccCCATGTTATCGTAGTCATCATCACCATACTCCATGTCATCTCCGTACATGCCATCCCCATCATCATCTCCCATCTTGCCCCGTCCACGTCCTCGGCTTCCTCCTCTTCCGCGACCCCTCATACCCCCTCTGCCACGGCCTCTTAAGTTCTTAATTCGGCCTCTACCACCTCTGCCACGCATTCCACCTCTACCCTCTTTTTCCTTTCGGTATTGATTAAGTTCCTTGGTGAAATCATCGTAGTCATCATCACCCATGTCTTCCTCCTCCTCACCCTCATAGTTCTCCTCATCATAATCGTCATAGCCACCATAGCCTTGTTTGTCCCGGCTTGTCATGTAGCCGCCTTTCTTTCCCATGGGTGCACCATGACccgaaggaggaggaggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5707 lncRNA upstream 198753 16480335 ~ 16480652 (+) True G4214
XR_002649856.1 lncRNA upstream 312716 16356282 ~ 16366689 (+) True LOC111192355
TU5658 lncRNA upstream 314388 16356675 ~ 16365017 (+) False LOC111192355
XR_002649857.1 lncRNA upstream 328854 16349607 ~ 16350551 (+) True LOC111192356
TU5647 lncRNA upstream 364468 16314112 ~ 16314937 (+) True G4167
TU5862 lncRNA downstream 463702 17144921 ~ 17145205 (+) True G4331
TU5865 lncRNA downstream 473541 17154760 ~ 17155096 (+) True G4334
TU5868 lncRNA downstream 476425 17157644 ~ 17157851 (+) True G4337
TU5877 lncRNA downstream 507813 17189032 ~ 17189246 (+) True G4346
TU5942 lncRNA downstream 666443 17347662 ~ 17348010 (+) True G4401
XM_007245963.3 mRNA upstream 35585 16633323 ~ 16643820 (+) True LOC103044410
XM_007245962.3 mRNA upstream 35585 16633323 ~ 16643820 (+) False LOC103044410
XM_007245965.3 mRNA upstream 61475 16561486 ~ 16617930 (+) True mark4
XM_007245966.3 mRNA upstream 61475 16561487 ~ 16617930 (+) False mark4
XM_007245967.3 mRNA upstream 61475 16561487 ~ 16617930 (+) False mark4
XM_022671138.1 mRNA downstream 8015 16689234 ~ 16691759 (+) True LOC111192859
XM_022669057.1 mRNA downstream 773131 17454350 ~ 17873816 (+) False lsamp
XM_022669050.1 mRNA downstream 773133 17454352 ~ 17873816 (+) True lsamp
XM_022671146.1 mRNA downstream 1328959 18010178 ~ 18012103 (+) True LOC103039709
XM_022669104.1 mRNA downstream 1336540 18017759 ~ 18022389 (+) True LOC111192370
TU5717 other upstream 56336 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 56665 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 133551 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 1517131 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 1633021 15046313 ~ 15046384 (+) True trnae-uuc_1
TU6119 other downstream 1390745 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 1719835 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 1722486 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 2078156 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 2078156 18759375 ~ 18759858 (+) False G4612

Expression Profile