RNA id: TU5868


Basic Information

Item Value
RNA id TU5868
length 208
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G4337
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17157644 ~ 17157851 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaagagtagcactttttaaaagaaatgtaacataagaaaggtaaagggcaaatattaaccatgtaagctgtttatattgcttgcagtttaggtgaagcaagcatgtgtaaagcattttaatgtaaaattgcttaattttgctgaattaaatacaagtaacaaagtaaacgagtaacaaaaatatgaacaccacacaagggttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5865 lncRNA upstream 2548 17154760 ~ 17155096 (+) True G4334
TU5862 lncRNA upstream 12439 17144921 ~ 17145205 (+) True G4331
TU5801 lncRNA upstream 476425 16679405 ~ 16681219 (+) True G4277
TU5707 lncRNA upstream 676992 16480335 ~ 16480652 (+) True G4214
XR_002649856.1 lncRNA upstream 790955 16356282 ~ 16366689 (+) True LOC111192355
TU5877 lncRNA downstream 31181 17189032 ~ 17189246 (+) True G4346
TU5942 lncRNA downstream 189811 17347662 ~ 17348010 (+) True G4401
TU5947 lncRNA downstream 208996 17366847 ~ 17367251 (+) True G4406
TU5961 lncRNA downstream 291543 17449394 ~ 17513800 (+) True G4420
TU5992 lncRNA downstream 689913 17847764 ~ 17851443 (+) True G4451
XM_022671138.1 mRNA upstream 465885 16689234 ~ 16691759 (+) True LOC111192859
XM_007245963.3 mRNA upstream 513824 16633323 ~ 16643820 (+) True LOC103044410
XM_007245962.3 mRNA upstream 513824 16633323 ~ 16643820 (+) False LOC103044410
XM_015604948.2 mRNA upstream 543846 16561487 ~ 16613798 (+) False mark4
XM_022669057.1 mRNA downstream 296499 17454350 ~ 17873816 (+) False lsamp
XM_022669050.1 mRNA downstream 296501 17454352 ~ 17873816 (+) True lsamp
XM_022671146.1 mRNA downstream 852327 18010178 ~ 18012103 (+) True LOC103039709
XM_022669104.1 mRNA downstream 859908 18017759 ~ 18022389 (+) True LOC111192370
XM_007233939.3 mRNA downstream 966843 18124694 ~ 18131953 (+) True LOC103030597
TU5717 other upstream 534575 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 534904 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 611790 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 1995370 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 2111260 15046313 ~ 15046384 (+) True trnae-uuc_1
TU6119 other downstream 914113 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 1243203 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 1245854 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 1601524 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 1601524 18759375 ~ 18759858 (+) False G4612

Expression Profile