RNA id: TU5707


Basic Information

Item Value
RNA id TU5707
length 318
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G4214
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16480335 ~ 16480652 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACCCTTTCCCACGCCTTCATTGCTTGGTCTCttgtgtatattgtatgtgCCTATGtgctgaggttttttttttgatgttccTACACTGTGCTCTTCAGGGCACAGTCTaggggtatgtttttttttaccctcttCTTCCCCCTTGTATCCCTCTAACTGAAGAAATGATTGGCGGCGCGTGCACACGCTGCGGCTTACCCTGTCTTCCTATCCTGTCCTGTTTCCCCCTTGTATGTTATTGTATGGATGGGTTGATGGCTAATTTCGCTGGTTGACCATGTGACAATAAAGgcaattctattctattctattctatt

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649856.1 lncRNA upstream 113646 16356282 ~ 16366689 (+) True LOC111192355
TU5658 lncRNA upstream 115318 16356675 ~ 16365017 (+) False LOC111192355
XR_002649857.1 lncRNA upstream 129784 16349607 ~ 16350551 (+) True LOC111192356
TU5647 lncRNA upstream 165398 16314112 ~ 16314937 (+) True G4167
TU5643 lncRNA upstream 167666 16311941 ~ 16312669 (+) True G4164
TU5801 lncRNA downstream 198753 16679405 ~ 16681219 (+) True G4277
TU5862 lncRNA downstream 664269 17144921 ~ 17145205 (+) True G4331
TU5865 lncRNA downstream 674108 17154760 ~ 17155096 (+) True G4334
TU5868 lncRNA downstream 676992 17157644 ~ 17157851 (+) True G4337
TU5877 lncRNA downstream 708380 17189032 ~ 17189246 (+) True G4346
XM_007245975.3 mRNA upstream 3230 16454684 ~ 16477105 (+) True LOC103047564
XM_007245984.3 mRNA upstream 188215 16280969 ~ 16292120 (+) True LOC103022964
XM_007245980.3 mRNA upstream 203502 16271162 ~ 16276833 (+) True LOC103022345
XM_007245988.3 mRNA upstream 268830 16205897 ~ 16211505 (+) True dll3
XM_007245989.2 mRNA upstream 287767 16159758 ~ 16192568 (+) True timm50
XM_007245974.3 mRNA downstream 1544 16482196 ~ 16530242 (+) False exoc3l2
XM_007245973.3 mRNA downstream 10407 16491059 ~ 16530242 (+) True exoc3l2
XM_015604961.2 mRNA downstream 50697 16531349 ~ 16536523 (+) True LOC103030966
XM_022668852.1 mRNA downstream 52438 16533090 ~ 16536523 (+) False LOC103030966
XM_015604962.2 mRNA downstream 57819 16538471 ~ 16542443 (+) True LOC107197545
XR_002649582.1 other upstream 1318061 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 1433951 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 1441421 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 1516752 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 3496066 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 62290 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 138394 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 138394 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 1591312 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 1920402 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile