RNA id: TU181368


Basic Information

Item Value
RNA id TU181368
length 594
lncRNA type intronic
GC content 0.47
exon number 2
gene id G134085
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23815916 ~ 23817235 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGAGGTGGGCTTCCTCTGTTGGCTGGATACTCCCAGTCAATGTCCAACCCATCGAACTCATACTTCCTCAGAAAGGCAATGACAGAAGTGATGAAGGTCTGGCGGTTGGTGGAGGAGGCCACCATGTTAGAGAATCTAGCCGGAGTGATGAGAGGGAAATGAAGTTGACACATTGATATTCTGAGTGCTCTGCCCATGCTAAAATTAAATTAGGTTCTTACCCTGAGGAACCAAAGTTCCATCCACCAACTGACAGCAGAGTTTTCAGATCACCATTCCTgTTGTCCTTCAGGGCATTGAACTGGCTGTAGAGCTCCACATCATTCCATTCATAAGTGGCAATCTGGTAGCTGCTGGTCATGGTGGCGAAGGCGTAGAGGAGATGGGTACACAGGCATGGGTCGATGTCATTGGGCATGTAGATGGTAGGAGGTGGGCGATACTGTGCCCAGTTGGTGAAGTAGCATGATAAGATGTAGGCAGAGCCTGTCCAAagcaacaaaatacataaatcagTTGGTTGTGTGTATTAGCTTCTGAGTAAAATCTGAAACCACAGCAATATAGCCAAGTACTTACCAAGCTGCATATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181365 lncRNA upstream 9375 23804250 ~ 23806541 (+) True G134083
TU181346 lncRNA upstream 56921 23743804 ~ 23758995 (+) False G134070
TU181349 lncRNA upstream 71591 23738935 ~ 23744325 (+) True G134070
TU181347 lncRNA upstream 74164 23738935 ~ 23741752 (+) False G134070
TU181311 lncRNA upstream 181325 23632470 ~ 23634591 (+) True G134052
TU181537 lncRNA downstream 304172 24121407 ~ 24122160 (+) True G134204
TU181524 lncRNA downstream 323835 24141070 ~ 24147795 (+) True G134197
TU181558 lncRNA downstream 411322 24228557 ~ 24229096 (+) True G134225
TU181566 lncRNA downstream 439636 24256871 ~ 24257103 (+) True G134233
TU181568 lncRNA downstream 500640 24317875 ~ 24322181 (+) True G134234
XM_015605967.2 mRNA upstream 92905 23717064 ~ 23723011 (+) True LOC103023698
XM_007249977.3 mRNA upstream 109925 23671556 ~ 23705991 (+) False LOC103026317
XM_007249979.3 mRNA upstream 109925 23671556 ~ 23705991 (+) False LOC103026317
XM_007249978.3 mRNA upstream 109925 23676371 ~ 23705991 (+) True LOC103026317
XM_022677362.1 mRNA upstream 145960 23655148 ~ 23669956 (+) True LOC103037602
XM_007249958.3 mRNA downstream 2378 23819613 ~ 23832512 (+) True uba3
XM_007249961.3 mRNA downstream 2381 23819616 ~ 23832512 (+) False uba3
XM_015605965.2 mRNA downstream 2565 23819800 ~ 23832512 (+) False uba3
XM_007249962.2 mRNA downstream 17119 23834354 ~ 23857902 (+) True LOC103021840
XM_022677374.1 mRNA downstream 133666 23950901 ~ 23953570 (+) True LOC111194121
TU181318 other upstream 158274 23655360 ~ 23657642 (+) False LOC103037602
TU180554 other upstream 2741865 21069316 ~ 21074051 (+) True G133509
TU180545 other upstream 2797939 21011730 ~ 21017977 (+) True G133503
TU180543 other upstream 2800000 21009907 ~ 21015916 (+) True G133502
TU180542 other upstream 2800858 21008743 ~ 21015058 (+) True G133501
TU181574 other downstream 506260 24323495 ~ 24328327 (+) True G134236
XR_002650925.1 other downstream 640641 24457876 ~ 24477650 (+) False LOC103040548
TU181746 other downstream 672670 24489905 ~ 24502977 (+) True LOC103040021
TU181747 other downstream 673768 24491003 ~ 24502977 (+) False LOC103040021
TU181830 other downstream 804673 24621908 ~ 24630082 (+) True G134426

Expression Profile