RNA id: XM_007249958.3


Basic Information

Item Value
RNA id XM_007249958.3
length 2799
RNA type mRNA
GC content 0.41
exon number 18
gene id uba3
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23813195 ~ 23832512 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCGGTGCATTGTGGGAAGGCATGGCACGGTGAAGGCATAAAGTATGGCGGATGGGGAAGAGCCggagaagaaaagaaggagaATAGAGGAGCTGACTGAGAAaaTGGCAGTGGATGTCGGCAGCACCGGCGATTGGGATGGGCGATGGAGTCACGTGCAGAAGTTTCTGGAGAGATCTGGGCCCTTCACACACCCTGATTTTGAAGCGAGTGAGGAGacaCTCCAGTTTTTATTGGACACATGCAAGATCCTGGTGATTGGAGCTGGTGGTCTTGGATGTGAGCTTCTAAAGAACCTGGCACTGTCAGGATTCCGTCATATCCACGTCGTAGACATGGACACCATTGACGTGTCCAATCTGAACAGACAGTTCCTCTTCAGgtCAAAAGACGTAGGGCGTCCCAAGGCAGATGTAGCAGCTGACTTTGTAAACAGCCGAGTTCCTGGATGTCACGTTGTACCACACTTCAAGAAGATTCAAGATTTTGATGAATCGTTTTACAGACAATTCCACATTATTGTGTGTGGGTTGGACTCAATCATTGCTCGACGCTGGATGAATGGAATGCTGCTGTCACTGCTTGTGTATGAAGATGGAGTTTTGGATCCCAGCTCCATCATCCCACTGATAGATGGAGGTACAGAAGGATTTAAAGGGAATGCGAGAGTTATCCTGCCTGGAATGACTGCATGTATAGACTGTACACTGGAGCTGTACCCTCCACAGATTAATTTCCCCATGTGCACTATTGCTTCAATGCCACGGCTGCCTGAACACTGCATTGAGTATGTGAGGATACTGCAGTGGCCCAAAGAGAAACCATTTGGAgATGGTGTAGCTCTGGATGGTGATAACCCTGAACACATTCAGTGGGTGTTTCAGAAGTCTCTGGAGAGAGCAGCTGAATTTAACATCACTGGGGTTACTTACAGACTCACTCAAGGAGTGATAAAACGAATCATACCTGCTGTTGCATCCACTAATGCAGTCATTGctgCTGCTTGTGCTACAGAAGTTTTTAAGATTGCTACAAGtgcttatATTCCTTTAAATAATTATCTGGTCTTCAATGATGTGGATGGCTTGTATACTTACACATTTGAGGCTGAGCGAAAGGATAATTGCTCAGCATGTAGTCAAGTTCCTCAGAAGCTACAGTTTCCTCCCTCTGCTAAACTACAGGAAGTTCTGGAGTATTTGACTGAGAACGCATCTCTacaaATGAAATCTCCAGCCATCACTGCAACACTTGAaggcaaaaataaaacactttatttacagACTGTTGCCTCAATTGAAGAAAGAACAAGACCAAATCTCTGCAAAACCTTGAAAGAGCTGGGATTGGCTGATGGGCAGGAGTTAGCTGTGGCTGACGTCACCACACCCCAAACAGTTCTCTTCAAGCTCAACTTCACATCCTAAACACAACCAGTCCAGCATCTCATATGCCAGACTCTTCCTGATAGAATACTGCAGTGAAGGCTCTCTCCACACTTTATTCATGTGACTGTCTTTCCTTTATAGACAAAACCGATTGAAACagctgttattaatatttaagtCTCTGTTTTATTGTGTAAATAAGGCTGATTCTTGGGGATGTCCCTTTTGCCGATCAGAGTCATAGTTTAATCAACTGGGTATTCAGTtccaatccttttttttttgtgctttgttttGGCAGCGTGCCCTCTGGTGTCTGCTAGACTGTATTAATGGACATTATTCACAGCCAGGAGAGATGATGAGTGTTCCCAGGAGGGTAACAAAACAGTTTAAAGTCTGCAGTGTGGCAAACCTCTGCCAATTTGTTCACTGGTATTTAAACCATGGGGAGAAATGCCCTCGACTTTTGAATTAGGGTTGTTtagaaatgtgtgtatatatatcatACAACCACTCCATTTTACCAATGGGAGTACTTCACAGTTTATTAGCACTGAATGAATAGTTCTGGCTTATGAACATACAGTATAGAAAATAAGATAATTGCGCATTCACAAcagtgtaaaataattattccgCCTATTATACAAAAAATCCAAATACACCAGTTCAGAGTGTGTACCAGTATACACACATCAAACATAAAGCTATTCATAATAGCAATTCAGCTTTTTCAAAATAGCTTTTGGCAGAATGATCATGAAGAGCAGTCAAACTGTATAATAAAGACATTTAAGTAAGCCAACAAACCAATGAATCGTTTAAGAATGTAATGTtttgaaaattgtttatttaaaccaaaattattttacctcagtattcattagcagcactgcttatattgtttaatttgtgtttctGTAGAAACACAAGCATTAGATTGGATTGGAATGGAAAGGTATTTGTGAATACTCTGCATTTAAGATGTATATTAATCTGATTTAAGGGCAAAAACTGGATTGGGACATCCCTACAGATTCTGGATACACCTGTAATGTTTATGTTGTGTGCCTATTCAGTCACCCAGAAAAAGCTCATTTGAAGTCTCCTCACAGTTAGATATAGTTGTCAGTTGAAGATAAGATAACTTCTGTCCCTGTTACTGACCAGTTCCACAAGCCAAGAGCAGCTGAAAGAGAAGATGCCAgcacaaacagtattctgcactGGTGGTACAGAATTCCccacttttatattattattatttctgaatCTCACAGAAAAATGGTTGGTGTTTTTATCAGAAACTGTTTTTGCCTGTTCAGATCtgttcaaatgtacatatcacTGGTCACTTctatgcgcatcaataaacatGCTGTAATGCAGACAGTACTTTGCCTAAAA

Function

GO: NA

KEGG:

id description
K10686 UBA3, UBE1C; NEDD8-activating enzyme E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181368 lncRNA upstream 2378 23815916 ~ 23817235 (+) True G134085
TU181365 lncRNA upstream 13072 23804250 ~ 23806541 (+) True G134083
TU181346 lncRNA upstream 60618 23743804 ~ 23758995 (+) False G134070
TU181349 lncRNA upstream 75288 23738935 ~ 23744325 (+) True G134070
TU181347 lncRNA upstream 77861 23738935 ~ 23741752 (+) False G134070
TU181537 lncRNA downstream 288895 24121407 ~ 24122160 (+) True G134204
TU181524 lncRNA downstream 308558 24141070 ~ 24147795 (+) True G134197
TU181558 lncRNA downstream 396045 24228557 ~ 24229096 (+) True G134225
TU181566 lncRNA downstream 424359 24256871 ~ 24257103 (+) True G134233
TU181568 lncRNA downstream 485363 24317875 ~ 24322181 (+) True G134234
XM_015605967.2 mRNA upstream 96602 23717064 ~ 23723011 (+) True LOC103023698
XM_007249977.3 mRNA upstream 113622 23671556 ~ 23705991 (+) False LOC103026317
XM_007249979.3 mRNA upstream 113622 23671556 ~ 23705991 (+) False LOC103026317
XM_007249978.3 mRNA upstream 113622 23676371 ~ 23705991 (+) True LOC103026317
XM_022677362.1 mRNA upstream 149657 23655148 ~ 23669956 (+) True LOC103037602
XM_007249962.2 mRNA downstream 1842 23834354 ~ 23857902 (+) True LOC103021840
XM_022677374.1 mRNA downstream 118389 23950901 ~ 23953570 (+) True LOC111194121
XM_007249952.3 mRNA downstream 336893 24169405 ~ 24186748 (+) True LOC103045952
XM_007249951.3 mRNA downstream 409988 24242500 ~ 24295274 (+) True LOC103045451
XM_022677379.1 mRNA downstream 409988 24242500 ~ 24291312 (+) False LOC103045451
TU181318 other upstream 161971 23655360 ~ 23657642 (+) False LOC103037602
TU180554 other upstream 2745562 21069316 ~ 21074051 (+) True G133509
TU180545 other upstream 2801636 21011730 ~ 21017977 (+) True G133503
TU180543 other upstream 2803697 21009907 ~ 21015916 (+) True G133502
TU180542 other upstream 2804555 21008743 ~ 21015058 (+) True G133501
TU181574 other downstream 490983 24323495 ~ 24328327 (+) True G134236
XR_002650925.1 other downstream 625364 24457876 ~ 24477650 (+) False LOC103040548
TU181746 other downstream 657393 24489905 ~ 24502977 (+) True LOC103040021
TU181747 other downstream 658491 24491003 ~ 24502977 (+) False LOC103040021
TU181830 other downstream 789396 24621908 ~ 24630082 (+) True G134426

Expression Profile