RNA id: XM_007249951.3


Basic Information

Item Value
RNA id XM_007249951.3
length 2728
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC103045451
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24242500 ~ 24295274 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAGAAATCAGACCCCAGCTGATTCAGGGGCtgactgatcacacacacacacgcacacacacacacacacacactgctcagtACAGTCTAACCAGTATAATGAACAGTCTGCGCTCACCTTTAATATCCCTCCGccaaacactgagagaaagttCAGCGGGAGACTGAGTgaggagcggagcggagcttaTGGAGGAGAGAGCGGCCGGAGCCGCCAGAGGAGCAGCGGAGAAAGTGGACTAGTGGACACcagacccagagagagagagagagagagctggGCCTCAGGCATGACGACGGCTTCGTGGGAAGTGGATTTGACTCACTCTAACGGCTCCACTCTGAGGACGAACCTGGCCGGCTCTCTGTTCAACTTGAGCAGTAGCTTTGGTGGTACGGAGGCCTTCCTGTGGCTCACCTCGGAAAACGGCTCCTGGACCACCTCGGGCCCCTCGTTGGCACCGGCGGGGAAAGGGCGGATACGGGACCAGGCGCTGGCCCAGGCTGAGATCACTGTACTGGGGCTGGTGTTAGCACTCACCACACTGGGGAACAGCTTTGTGCTGTGGGTGCTGCTGCGCCGGAGAAAACACCATGCACCCATGCACCTCTTCATGATCAACCTGTGCGTGGCTGACCTGGTGGTGGCCTTCTTTCAGGTTCTGCCGCAGCTGGTGTGGGACATCACCGAGCGTTTCCAGGGCCCTGACGCGCTGTGCCGTTCCGTCAAATACCTGCAGATCGTGGGAATGTTTGCCTCCTCGTACATGATCGTCGCCATGACAGTGGACCGCCACTATGCTATCTGCTGCCCCTTGCAGGCATACAGAGGAGGAGAGACCTCTCGCTGGAACACCCCCATTATGACAGCCTGGGGCCTGGCCTTGGTACTCAGTTTACCACagGTCTTCATCTTCTCACGGTCGGAGGTGGCCCCGGGGGATTTTGAGTGCTGGGGTCACTTTGCTGAGCCGTGGGGCCTCAAGGCTTATGTCACCTGGATGACTGTGGCTGTCTTCATTCTGCCCGCATTTATCATCACCGTGTGTCAGGTACGCATCTTCAGAGAGATCCATGACAACGTCTACCTGAAGTCAGAGCGAATGGTGACGGCAGAGTTTAAGCGGAACTCAGTGCTTTTTCATTTCCCTCAGAGAGAAGGGCATCGTGGGAGGTCCTGTAGTGGTAGAGACAGAGAGGGGCGGGGCAGCCATTCTCATCAGATGGACGGCAGCCTCCATGGCCGGCATCGTGGCAGCCCCGTTCGCCCCCCACCTACCCCGACTGACCCTCAGAGCTCGTACGACAGTCTCTCCATTACCTGTGACCCCTGTGCCGTGCCCCTCCCCTCTTCAGAGATCTCTGCCTCCACCACTCCCCGCTTACTCAACTTCAGCCCTGAACACGCCCCGGGGTCTCCCCCAGACCCCACTCACCCACACACCATGCCCACCAATAACTCCTGTGCCCGGACCAGAGGCTCCTCCTCATTGGCTGGACAGCTTTCGGGTACTCCAGACTTGTGGCCGGATGTGCTCCCAGACACAACAGCTCTTGGAATGCCTACCCAGTATCCTCCCCTTCCGCCTCCCTCAGGTATCTCCAAGGCCATGTCCAAGACGGTGAGGATGACACTGGTCATAGTGCTGGTCTACACAGTCTGCTGGTCTCCATTCTTCATCGTCCAGCTCTGGGCAGCCTGGGACCCCAACCCACCAGATCAAGGAGTAGCATTTACCATCCTGATGCTGCTGGCCAGCCTGAACTCCTGCACGAACCCCTGGATCTACACAGCCTTCTCCAGCAGTGTGTCACGGGAGCTGCTGGCTCTGCTGCGCTGTAGAGTACCTTCACCACGCAGGGGATCTTTACCCGACGACTCCACCgtcacacacacctccaccactACCAAGGACAGCATCTACTGACTGGTACACACACAGgccactctacacacacaggAAACTACTGTCCAGAAATACACGGGTATACCACCACAATCCATCAAATCCATCACCATTTCCATCACACTACATCCCCGAAACATCCAAAACTGACTCATAATAACTCATAATAACCAGGGACAGAAGCTGTGGGCAAAGTCAATCAAAAATATTGTCTCACGTacacaaattaatatttaaaagtttggaatcacTTGTTTTATTAGTTACCACAGTTGTGATATTAGGAAGTAACttctaaaatcataaaaaaattattaaaaaataccgTATATGCCATCCAATAAAAAGcaatcttcatttttgttgatttttagtttactacataatttgaacatacaaacTCTCATATGCCCCATGTCAGAATTTCTtgatggaccaataaaaattctctttttttgcattgctttccattgaaagttaaaaaagttaaatatttcttttgtaaagcttttttttgaaAACCCATTATCcaattttatttgcaaatatgAATTTTGAAAAATTAGAAACCGCTTTCTATCTAATGTCTGACTTTACATATGAAATAGGAAATTGCTTTTAATCCATCTGTCctgttttgcatttatttatcagGACAGCACAaacctcttttaaaaaaaacaaaagaccaAAATTAGTGGGTcgacaaaatattttaaatattttaatattttcaatcCCCATCTGAAACCCACCCCCTTCCCActctccttctttttttcttttttttctaattttttccccaatttttccccaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181558 lncRNA upstream 13404 24228557 ~ 24229096 (+) True G134225
TU181524 lncRNA upstream 94705 24141070 ~ 24147795 (+) True G134197
TU181537 lncRNA upstream 120340 24121407 ~ 24122160 (+) True G134204
TU181368 lncRNA upstream 425265 23815916 ~ 23817235 (+) True G134085
TU181365 lncRNA upstream 435959 23804250 ~ 23806541 (+) True G134083
TU181568 lncRNA downstream 22601 24317875 ~ 24322181 (+) True G134234
TU181573 lncRNA downstream 37520 24332794 ~ 24336745 (+) False G134236
TU181705 lncRNA downstream 66001 24361275 ~ 24364475 (+) True G134334
TU181736 lncRNA downstream 139839 24435113 ~ 24437873 (+) True G134359
TU181725 lncRNA downstream 188749 24484023 ~ 24484838 (+) False G134349
XM_007249952.3 mRNA upstream 55752 24169405 ~ 24186748 (+) True LOC103045952
XM_022677374.1 mRNA upstream 288930 23950901 ~ 23953570 (+) True LOC111194121
XM_007249962.2 mRNA upstream 384598 23834354 ~ 23857902 (+) True LOC103021840
XM_007249958.3 mRNA upstream 409988 23819613 ~ 23832512 (+) True uba3
XM_007249932.2 mRNA downstream 162605 24457879 ~ 24480372 (+) True LOC103040548
XM_007249933.2 mRNA downstream 166321 24461595 ~ 24480372 (+) False LOC103040548
XM_022677382.1 mRNA downstream 199258 24494532 ~ 24503010 (+) False LOC103040021
XM_007249930.3 mRNA downstream 200417 24495691 ~ 24503010 (+) False LOC103040021
XM_022676758.1 mRNA downstream 246972 24542246 ~ 24550608 (+) True LOC111194043
TU181318 other upstream 584858 23655360 ~ 23657642 (+) False LOC103037602
TU180554 other upstream 3168449 21069316 ~ 21074051 (+) True G133509
TU180545 other upstream 3224523 21011730 ~ 21017977 (+) True G133503
TU180543 other upstream 3226584 21009907 ~ 21015916 (+) True G133502
TU180542 other upstream 3227442 21008743 ~ 21015058 (+) True G133501
TU181574 other downstream 28221 24323495 ~ 24328327 (+) True G134236
XR_002650925.1 other downstream 162602 24457876 ~ 24477650 (+) False LOC103040548
TU181746 other downstream 194631 24489905 ~ 24502977 (+) True LOC103040021
TU181747 other downstream 195729 24491003 ~ 24502977 (+) False LOC103040021
TU181830 other downstream 326634 24621908 ~ 24630082 (+) True G134426

Expression Profile