RNA id: TU181674


Basic Information

Item Value
RNA id TU181674
length 536
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G134314
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24276511 ~ 24277046 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acctGTGGTAAACTGAGTACCAAGGCCAGGCCCCAGGCTGTCATAATGGGGGTGTTCCAGCGAGAGGTCTCTCCTCCTCTGTATGCCTGCAAGGGGCAGCAGATAGCATAGTGGCGGTCCACTGTCATGGCGACGATCATGTACGAGGAGGCAAACATTCCCACGATCTGCAGGTATTTGACGGAACGGCACAGCGCGTCAGGGCCCTGGAAACGCTCGGTGATGTCCCACACCAGCTGCGGCAGAACCTGTGGGAGGAGCGTAGAGGGATTTGATGAGTAAAAGGCCAAGCTCTGAAACACACTGCCAACTTCCTCTCCACATCTTCCACCTGTCACTCTAAGAGAGAGGGGATACGAGGTCAGGAAATCCAATATGTTTAGGACAAGGTCAGTGTAAAAGGGATGCTTTGGCTGCACTCAATCTTACACCACGAACTGTAAAGTAATCAGGCACTAAGTCCTGAGTGAGTGATGCTTTgtagaaccacttttggttcctaaagaattttctattttctttaaatactatttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181671 lncRNA downstream 33737 24242517 ~ 24242774 (-) True G134311
TU181668 lncRNA downstream 47052 24229176 ~ 24229459 (-) True G134308
TU181667 lncRNA downstream 47557 24228592 ~ 24228954 (-) True G134307
TU181665 lncRNA downstream 69423 24206769 ~ 24207088 (-) True G134305
TU181661 lncRNA downstream 85554 24188185 ~ 24190957 (-) True G134301
TU181769 lncRNA upstream 84272 24361318 ~ 24378393 (-) True G134377
TU181770 lncRNA upstream 85097 24362143 ~ 24362833 (-) True G134378
TU181771 lncRNA upstream 93333 24370379 ~ 24371479 (-) True G134379
XR_002650843.1 lncRNA upstream 154286 24431332 ~ 24433471 (-) False LOC111194023
TU181813 lncRNA upstream 248033 24525079 ~ 24525572 (-) True G134413
XM_022677378.1 mRNA downstream 108709 24141054 ~ 24167802 (-) False fam120c
XM_022677377.1 mRNA downstream 108709 24141054 ~ 24167802 (-) True fam120c
XM_022677376.1 mRNA downstream 147829 24121383 ~ 24128682 (-) True hsd17b10
XM_007249953.2 mRNA downstream 246191 23872012 ~ 24030320 (-) True LOC103046267
XM_022677380.1 mRNA upstream 55722 24332768 ~ 24336769 (-) True LOC111194122
XM_007249945.3 mRNA upstream 61642 24338688 ~ 24350054 (-) True ikbkg
XM_007249947.3 mRNA upstream 61642 24338688 ~ 24350053 (-) False ikbkg
XM_007249946.3 mRNA upstream 61642 24338688 ~ 24350053 (-) False ikbkg
XM_007249948.3 mRNA upstream 61642 24338688 ~ 24350052 (-) False ikbkg
TU181672 other downstream 3442 24272744 ~ 24273069 (-) True G134312
TU181382 other downstream 645356 23624281 ~ 23631155 (-) True G134093
XR_002650924.1 other downstream 1360127 22909821 ~ 22916384 (-) False LOC103034468
XR_002650923.1 other downstream 1378253 22890646 ~ 22898258 (-) True LOC103038244
TU181092 other downstream 1428612 22839406 ~ 22847899 (-) False LOC103040235
TU181779 other upstream 154113 24431159 ~ 24433469 (-) True LOC111194023
TU181775 other upstream 206931 24483977 ~ 24485728 (-) False trpc4ap
trnaf-gaa_3 other upstream 528525 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181951 other upstream 529888 24806934 ~ 24809215 (-) False ebp
trnah-gug_15 other upstream 533385 24810431 ~ 24810502 (-) True trnah-gug_15

Expression Profile