RNA id: XM_022677380.1


Basic Information

Item Value
RNA id XM_022677380.1
length 908
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC111194122
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24332768 ~ 24336769 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCACTGACGTGTCTGTCTGTATTTCTTTCAGAAAGCTCAGTTCTCTGTGGTTACTTCAGCCTGAGAAATCAACATGATGCGCCTCGTTTCTGCAGTTCTGGCTCTCTGTCTGAGTCTGTGTGCGGCTGAGACCTGCACAGATCCGGTCATCTCCACCTCCTCATACACAACAAATGATGCAGTCATCTCCTCTGAGACGGTCTTCATTGTTGAGCTGAGTCTGGCCTGTGGAAATGGAGCCCAGAGCCTTGCCCTTTACGCAGATGTCAGTGGCAGACAGTTTCCAGTGACCAGAGGCCAGGATGTTGGAAAATATCAGGTGTCCTGGAGCGCTCCCCACAATCAGGCTGGTTCAGGCACATACCAAGTCAAGTTCTTTGATGAGGAGTCCTACAGCATGCTGCGCAAGGCTCAAAGAAATAATGAAGATGTTGAAGCCATTAAGCCTCTCTTCACTGTTAATGTAGATCACCGGGGTGCATGGAATGGTCCGTGGGTGTCTACTGAGGTCCTGGCTGCTGTCATTGGCATTGTTTTGTACTACCTGGCCTACAGCAGCAAAAACTCAATTCAAGCATAAAGATAATTCAGTgctaaatagataaataagcaatctgacatttaaaaaaaaaaaactccttagCAAGTTTATATTGCCACTGCGCTGCAGCTCATTCAGTGAGGATTTATTATGCTAGCGCTGCGAGTCATTTGCTCAAACCAGAGGactgtaatataataatgcaGGTTGGATGTAGCCTGAATGCCAATTGTCAATGTGTTAAGAGttataaaaatgttctgtcaGGCTGATACTCTGTGGTGACATTCCGCTGTTTGGAATGTCTGCATTTCAATGAAATtcattgaataaaaataaacctttttttaaactttgattttgaaa

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04571 SSR4; translocon-associated protein subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181674 lncRNA downstream 55722 24276511 ~ 24277046 (-) True G134314
TU181671 lncRNA downstream 89994 24242517 ~ 24242774 (-) True G134311
TU181668 lncRNA downstream 103309 24229176 ~ 24229459 (-) True G134308
TU181667 lncRNA downstream 103814 24228592 ~ 24228954 (-) True G134307
TU181665 lncRNA downstream 125680 24206769 ~ 24207088 (-) True G134305
TU181769 lncRNA upstream 24549 24361318 ~ 24378393 (-) True G134377
TU181770 lncRNA upstream 25374 24362143 ~ 24362833 (-) True G134378
TU181771 lncRNA upstream 33610 24370379 ~ 24371479 (-) True G134379
XR_002650843.1 lncRNA upstream 94563 24431332 ~ 24433471 (-) False LOC111194023
TU181813 lncRNA upstream 188310 24525079 ~ 24525572 (-) True G134413
XM_022677378.1 mRNA downstream 164966 24141054 ~ 24167802 (-) False fam120c
XM_022677377.1 mRNA downstream 164966 24141054 ~ 24167802 (-) True fam120c
XM_022677376.1 mRNA downstream 204086 24121383 ~ 24128682 (-) True hsd17b10
XM_015605948.2 mRNA downstream 302448 23872012 ~ 24030320 (-) False LOC103046267
XM_007249953.2 mRNA downstream 302448 23872012 ~ 24030320 (-) True LOC103046267
XM_007249945.3 mRNA upstream 1919 24338688 ~ 24350054 (-) True ikbkg
XM_007249947.3 mRNA upstream 1919 24338688 ~ 24350053 (-) False ikbkg
XM_007249946.3 mRNA upstream 1919 24338688 ~ 24350053 (-) False ikbkg
XM_007249948.3 mRNA upstream 1919 24338688 ~ 24350052 (-) False ikbkg
XM_022677381.1 mRNA upstream 16190 24352959 ~ 24358129 (-) True LOC103043623
TU181672 other downstream 59699 24272744 ~ 24273069 (-) True G134312
TU181382 other downstream 701613 23624281 ~ 23631155 (-) True G134093
XR_002650924.1 other downstream 1416384 22909821 ~ 22916384 (-) False LOC103034468
XR_002650923.1 other downstream 1434510 22890646 ~ 22898258 (-) True LOC103038244
TU181092 other downstream 1484869 22839406 ~ 22847899 (-) False LOC103040235
TU181779 other upstream 94390 24431159 ~ 24433469 (-) True LOC111194023
TU181775 other upstream 147208 24483977 ~ 24485728 (-) False trpc4ap
trnaf-gaa_3 other upstream 468802 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181951 other upstream 470165 24806934 ~ 24809215 (-) False ebp
trnah-gug_15 other upstream 473662 24810431 ~ 24810502 (-) True trnah-gug_15

Expression Profile