RNA id: XM_007249936.3


Basic Information

Item Value
RNA id XM_007249936.3
length 5196
RNA type mRNA
GC content 0.50
exon number 25
gene id LOC103041866
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24359390 ~ 24408380 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcatgtgtgtgtgtaagagagagaggagggctATTTTGAATGCGCACCTCAGTGAGTGAGTGCGCGCGCGAAGAGGGAGAGGGTGGAGAGAGGAGTGTGTTGAATGTGTCGGAGGGAGAGAAATTAAATTGACTCCATGAAATCTGTGTGACTCAAACACAGGGTTCTCTGTgtccaggagagagagagagagggagaggaggaggagaaggagagagagggagagaaagagaaggagatagagaaagagagagcacagtaGACTTCAGAGAATGAGACGAGGACAATCCAATTCATCCCCTGGCTCAGGAACCAGATGAAGAAAGCTAGCCAGCCTCCTGTCTGCTCTGTTCCGACGCTGAAGCCGTAAAACACACAGGAGGGAGATTTCACCCTACAGGCAGAGAAGGAACAAACGCTGAGGGAACTGCTAACTGTAGCTCAGCTTGAGTCagacatagacacacacacacacacacagttctctGTTCCGTTTCTACAGCGGGTACAGAAGATCAAGGGGCAGAGTTGGAGTGGTTGTCCAGCGTGCGTTCATACTGAAGTGACTGTAGCTCAGCACACTCAGAGCGAGAGAcaaagggagaaagaaagaaagagagagagagcgagagagagagagaacaaacacATCTGTCTGCGACACTGTGGATTTCCTCCTCGCTGTGTAGAAGAGCTGCAGCTGGATTGAAGAGAAAGAGCAGACACAGGTCTGAGCCGTAAAACGAGACTCTCCCAGGACCACCCTGCTGCTCCTGCAGGACCATGTCGTCGCACGGGAAACTGAGGAAGGAAAAGGGGAGTCTGGCAGAGTACGAGAACCAGATCAAAGAGGTGCGCAGTCAGCTGTCAGAGCAGCTGAAGGTGTTGGATGCGCAGCTCGAGCAGAAGACACAGCAGCTGCAGGATCTGAGTGATTACCTGCGCAGGCGGGGAGAGATCGAGGCCGAGTATGCGCGCTCTCTGGAGAAACTCAGCGAGAGGTTCACCCTCAAGACCAAAAAGAAGGAGCAGTCTGATCAGTCTGTGGCTCAGAGCTGGACGGTGTTGCTCACTCAGACTAAGCAGGAGAGTCGAGACCACAGTTCCCTGAGTGAGCTGTGCAGCACCACCCTCACCCAGCGCCTGACCCACTGCATCGAGGACACACACCGCCTGGCCAAGAAGagtaAGGAGGTGGGGCTGCAGATGCAGGATGAGCTCCTGAAGGTCACCACAGAGCTGCAGACGGCTTTAAAGACTTATCACCAGTATCACACCGAGTGTCTTGCTGCTGAGGGCAAGCTGAAAGAAGCCACGAGACTGGAGGAAAGACAAACCGGCAAGTCATCCGACCTCGGCCTCGGCCAATCAGCAGGGCAGAGGCGCAGCTCGGTGAAGAAGATAGAGAGGCTGATGGAAAAGCGGCAAGGGAAAGTACAAGAGACTCAGCTAAAGTGTACCAAAGCTCGGAACGACTACCTGCTCAACCTCGCAGCAGCCAACGCCGCCATGAATAAGTACTATCTGGAGGACATATGCACTCTGATTGATTGCACAGACCTCGGCTACCATCTGTCTGTGTCAAGAGTCATGCGCGGCTACCTGTCCAACAGGAACCGGGCTCAGCAGAACCTGAAGAACGGCCTGCAGCAGCTGGACGCTTCAGTTAATGGTCTGGACCAGAGTCAGGACCGTGATGCTCTGCTGCAGGCCCATAATACAGCATTCTGCCTGCCTTTCCGATTCCAGCACCAGGCACACGAAGGTGACCAGGTATGCGAGGTGAGTGCAGACTGTCAGGTGAGGTATGAGATGGAGACAAGATTCCAGCAGCTGCAGTCCAGGCTGGCCTCCGTTACCCTGGAAACAGAGGAGGTCAGTAAAACCCTCAAGGCAACCCACACTGCTCTACTGGATAATATCTGTGATGACGACTGTAACCCCACACCTGACATCTCAGCCACCCTATCGCTGGAGAGCACAGGTGATGGCCCCGGCACCAAGCAAAGCCTGGCCAAGCGCAGAGCCAATCAGCAGGAGACTGAGATCTATTACTTTACTaaaGTGAAAGAGTACATGATCGGCAGCTCCCTCATCTCCAAACTCCAGGCCAAACATGACCTGTTAAAGGAAGCCATACAGAAAGCTGAGTCCATCGACAGCGATCCCTCAAGAATGCAGCCTGGTAGGGCAGTGCGTGTGCGGAAAGCCAGGCCTTGCTCCCAGTACAACCACAAACTCTTCACTGGAGACATGATCTCCTTCATCCAGAGCTCCGGGCAGCAGATCCCCCTGGTGGTGGAAAGCTGTATTCGCTTCATCAATCTTCACGGTCTGCATCATGAGGGAATTTTCAGAGTGCCAGGCTCTCAGAGTGAAGTCAATCACATCAGAGACGCGTTTGAAAGAGGGGAAGACCCGCTGACAGACAGCGAGTGTGACATTGATTCCGTAGCGGGGGTTCTGAAGCTCTACTTCAGAGGCCTAGAGAAGCCTCTGTTCCCCGAGGAGTTCTTCAATCAGCTCATGGAGTGTGTCCAGATTGAGAACATGACGGAGAGAGCAGCTCAGATAAAGACAGTGGTCTCATCCTTCCCTAGACCCATCATCATAGTAATGCGCTATCTCTTCGCATTCCTCCATCATGTTTCTCAGTACAGTGACGAGAACATGATGCAGCCTTATAACCTGGCAGTGTGCTTCGGGCCAAGTCTGCTGAGAGCAGCCGAGTCGGGCGATGCTGTGACCCTGCAGCCCCAGATTAATGCACTGGTCAAAACCCTAATCCTCCAGCATGAGAGCATCTTTCCCGGCCCTTCTGAACTACCAGGACCTGTGTATGAGAAATGCATGGCACTGGAACAGGAGTACTGTGAACCCATTACAGAAGAAGGTGAAGGAGATGCAGAACATGTTCCGAGTGAAGATGAATGGGAGGCAGTGGCTTTGTTTGATTATGTTGCACGGTCTGCAGCCGAGCTGTCATTCAAGCAGGGGGACCATGTCACACTGCACAGCAAAGCCTCTGCTGATTGGTGGAGAGGAGAAGTGGGAGGAGTCAAAGGCCTCATCCCTCATAAATACATCAGCGTCTCTGAGGGAGCGGAGAGAAAGcaggagagagggaagagagaggaCACCCGGGGTGGTAGCACAGGGAATCTCAATGAGGAGCAGCAACAGTCTGAACACAGTACTCGCATGCGGGTGAACAGTGACAGCGCGTCTCTACCAGGGAGGCAGAGGACCGgtagtggaggtggaggtgggaTTATAGGAGGAGGAAGCAGTGGGAATGTGAGCCCAGTACGGAAGCTCACCCTGCATGTCCCCGAGGGCCGACTCATCCTCCCGCCTCAGTCACCTGGGGCCACCCGCCAAGTCTCAGGttcGCAGGAACGCAGACACACTCTGGACAGTCTGAGGCCTATCGGCGGaccagcagacagacagacggtgCATGTCGACAAGGAGATCAGTCGGCAGATGAATTCGGTGTTTAAGGAGCTCCTGTCCCGTCAGCCTCCACAGGAAAGTTCAGTCCCTCCGTCTCCTTCCACCACGCCCTCCTCCTCCACTCCCTCTGCCTCCACCGGCGCTAACCGCCAGTCAGTGAAGAAAGTATCGGCCTTCAGCCTGCGCGGCCGAGGCCTCTTCAAACCTCCTGACCAGCAGGACTGATGGAGGGAGGACAGAAAGAAGGATGATAATTAAGAAGAAGGGAAGGATAATTGCAATCGTACTGAAAAGAATCAGAAAATCTATTTTTCCAAACATGTAATATGATATTCTTGGAAACCTCCATTATCCGGACCTTTGgtttatgaaaaaaacatgtttggttTGTgtagttccagtaacagagcCAGTGACtggtgatgatgacgatgatggtACTTGTTGCAGTGACCCCACTGGTCACTGGTGATGTTACTGTTTTGTAAAGGGTGCAGGCTAAGGTAAAGCAGGCACACTTTTTTTCGTCTGTGATTTTCCCCATTACCCCCAATGTCCAGTCATTGCAGTGATGTCCAGTGGAGTGGCTGAATGCTTTCACTGTAGTGCTATCACTGTTTAATTTTGATGAAGACTCGTTGGTTTCTAGTGGACAGCAAGTCTAAGGGCTCAAAAAGCCACTGCTGTGTTTCATCAGCATACTGGGAACGTCGTCTGTGACTGGGAAGAGTGCACACAGCTGTGAATGCGGGATCCTGACAGTCGACTGTCAGATTTATAACAGCTGAGGAAGAAAATTAAGCTtacattgattttattttaggcgGTAAACtggaaattaatatttttttgacaatataaaagattaattttgaattttcctttatttttgctataatttagttagattgtttttttaatgacctGAGCTCATTATTTGTTTTCCCTAGAGATGGGGAGACCAAACAGATCCTTTACAGCTGCAAGCAGACAGACAAAATATAGCAGCAATCTCATTGTCGGGTTTATGTTTCCGTAAATGGAAAAGTTGGTGTGCAGTGTTAACGGATACAGAATTGGTTAATCCATTGAAAATCTCGGAATATGCATTTTGAATTTGTACTAGTTTGGTCTTTATGTTGGTAACTCCATACTTTGTCTCTATTTACTTTTGGCTGGCTCATATGTGAATACACCACATGACATTTTTAACTGTACCTTGGTGAATTACGTGAACACACACGAACACGCACATATATAACCATGCAAAGACACTGGGAATGGGAACAGGTGTGATGACCAAAATAAGTGCAGCTCAGTAGCCACCTATTCCCCCATGAGTCCATTTACTCTGTCGTGTATGGAACCCTGACAGACAACTGTGAAGACAAGTGTCTCCCAGACACGCCTACAGCTCAGGAGTagctatagagagagagtgagagagagagagaacaagaggaaCTGGTAGACTGTAGAACTGACCAAACTGTGAACGAATAGGTGCCATCGCAGGACGTCCACTCACTCCTGTCAAGCcctaacaaacacacatacaaaaaaacatacaaaaacacctCCCTGCTCCTGTTCCAatcctcctactcctcctccttttcctcaTCTGCTACTCACTGATGCATCATCTTTCGCTTCTCTGTTACATGATGTCAGCAAAATTGTTGTCAAATGAAATCCAgtattatcacaataaataataaattatgtcGATCCGGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181674 lncRNA downstream 82344 24276511 ~ 24277046 (-) True G134314
TU181671 lncRNA downstream 116616 24242517 ~ 24242774 (-) True G134311
TU181668 lncRNA downstream 129931 24229176 ~ 24229459 (-) True G134308
TU181667 lncRNA downstream 130436 24228592 ~ 24228954 (-) True G134307
TU181665 lncRNA downstream 152302 24206769 ~ 24207088 (-) True G134305
XR_002650843.1 lncRNA upstream 22952 24431332 ~ 24433471 (-) False LOC111194023
TU181813 lncRNA upstream 116699 24525079 ~ 24525572 (-) True G134413
TU181814 lncRNA upstream 134093 24542473 ~ 24542852 (-) True G134414
TU181924 lncRNA upstream 213237 24621617 ~ 24631857 (-) False LOC111194123
TU181920 lncRNA upstream 213495 24621875 ~ 24631857 (-) False LOC111194123
XM_022677381.1 mRNA downstream 1261 24352959 ~ 24358129 (-) True LOC103043623
XM_007249945.3 mRNA downstream 9336 24338688 ~ 24350054 (-) True ikbkg
XM_007249934.3 mRNA upstream 11262 24419642 ~ 24425384 (-) True LOC103041050
XM_015605970.2 mRNA upstream 75585 24483965 ~ 24494425 (-) False trpc4ap
XM_007249929.3 mRNA upstream 75585 24483965 ~ 24494425 (-) True trpc4ap
XM_007249928.3 mRNA upstream 95974 24504354 ~ 24510554 (-) True nsfl1c
XM_007249927.3 mRNA upstream 163043 24571423 ~ 24605346 (-) False fam110a
TU181672 other downstream 86321 24272744 ~ 24273069 (-) True G134312
TU181382 other downstream 728235 23624281 ~ 23631155 (-) True G134093
XR_002650924.1 other downstream 1443006 22909821 ~ 22916384 (-) False LOC103034468
XR_002650923.1 other downstream 1461132 22890646 ~ 22898258 (-) True LOC103038244
TU181092 other downstream 1511491 22839406 ~ 22847899 (-) False LOC103040235
TU181779 other upstream 22779 24431159 ~ 24433469 (-) True LOC111194023
TU181775 other upstream 75597 24483977 ~ 24485728 (-) False trpc4ap
trnaf-gaa_3 other upstream 397191 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181951 other upstream 398554 24806934 ~ 24809215 (-) False ebp
trnah-gug_15 other upstream 402051 24810431 ~ 24810502 (-) True trnah-gug_15

Expression Profile