RNA id: TCONS_00013588


Basic Information

Item Value
RNA id TCONS_00013588
length 1292
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id XLOC_005923
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 20707546 ~ 20803133 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGATTTTGGGCTTTTTGCTTCCTGGCATTCCCCTTTCTATGATGTGCTCCTTTTTGTTACCCGTTTACGTTCAGGTCTTGTCTTGGGGGTGGCTTTGTGACCTTGGGAAATTTGAGCATCTCTTGGTGCTGCGTACGGAGAATTGAAAATGTCAGAGTCATTCTCTCTCCACCTTGATAAGCCTCTATTAAAAATTGTTCCTGGAATCACCAGCAAGCAGAAAAAAGGCAGCCTGAAGATTGAAGGAGACTGCACAAGTGAAGGCCCTGAGAGTCTCTCCAGGCCACAGTCCGGGACCCTGCCGTCCATATGTCTGGGTCTGCTTGGAGAAGAGAATAAAGACACAGAGCCTTATTAGCATTGCTCTCGGGGCTGGCAGGTGTTTGGTGCAGATGGGCCAGTGAACAGAATCTTCCTCTTCCACAGCCATTCGCTTCTGACTAAACCTGTCCAGGGGCCTCCTGACCTCTGACTGCACACTACAGACAGCTGAAGCTTGAGAAGACTCGGCCACAAGATGGGTCTAGCAGATCAGCTGTGTCAGCTCAGCCAAGTTACAAACACCCTCGAGGACCACATTTTTGGACATTTCAATTGAATCAGACCTCCCAGACTCTATCTTCATAGAGTTTTTCCATCATGGACTCAATGCCTTTTTTTAAACGACTCTGATAAATCTTAGTCCTCCAGGGTCTTTCCAAGAAGCCCTGGATATAACCCTGCAGGTCAGTGGGTCTCCATTATCTTGCTTTGTTTTCTGACCCTCGCcttgttaattgttttattttgtttgcccCCTGAGCTCTTTACCCCACTGCTCTTTTGATAAACCTGCATGCTTCTGTCTGTTCCTGTTTTACCATTGCCTGTCTCACTAAGCATTTAGCTCCACAAATCCACTGAAACCCGACTTTGTTTGTTACACAACAGGAGTTCTTGGAATGTCAGTCTTTATACTTCAGACTCTGAGAAACCATGTGTTGGAGACCCCCTTCAGCGGACCTGGTTTTCTTATCCCACTGTGCTTATGGTCCCATGGGGAGTGTGGGAGAGGAGTGTGACTGTACTCGTCTCAGAGCTGATTGCCGGTAACGACCAGAGATGAGTTGTTCCTTCCACCTCCAAATCATTGCACCCTGACTGTGGGCTTCCATTCGGAAAAGTGAATCATTTGTGCATAAGTTTGCAtccatataaaaacacacacactcacaaactctGGCCCAAGCCTGGCAGATGAGTTGCTTTTTGGTGAATATTTGTCACTGTTATTTTTCACATAATATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013585 lncRNA upstream 190463 20384123 ~ 20517304 (+) True XLOC_005920
TCONS_00013586 lncRNA upstream 273277 20433053 ~ 20434490 (+) False XLOC_005921
TCONS_00013587 lncRNA upstream 273277 20433113 ~ 20434490 (+) True XLOC_005921
TCONS_00011673 lncRNA upstream 1551808 19151268 ~ 19155959 (+) False XLOC_005913
TCONS_00011672 lncRNA upstream 1551808 19151268 ~ 19155959 (+) True XLOC_005913
TCONS_00011684 lncRNA downstream 53478 20856611 ~ 20859427 (+) False XLOC_005924
TCONS_00013592 lncRNA downstream 53808 20856941 ~ 20859427 (+) True XLOC_005924
TCONS_00013395 lncRNA downstream 615478 21418611 ~ 21418951 (+) True XLOC_005925
TCONS_00013593 lncRNA downstream 884095 21687228 ~ 21693578 (+) True XLOC_005928
TCONS_00011712 lncRNA downstream 1386596 22189729 ~ 22199148 (+) True XLOC_005935
TCONS_00011682 mRNA upstream 172819 20524921 ~ 20534948 (+) True XLOC_005922
TCONS_00011678 mRNA upstream 359472 19884631 ~ 20348295 (+) False XLOC_005917
TCONS_00011679 mRNA upstream 359472 20007366 ~ 20348295 (+) True XLOC_005917
TCONS_00011677 mRNA upstream 829039 19871646 ~ 19878728 (+) True XLOC_005916
TCONS_00011676 mRNA upstream 1380110 19322686 ~ 19327657 (+) True XLOC_005915
TCONS_00011685 mRNA downstream 797813 21600946 ~ 21621856 (+) False XLOC_005926
TCONS_00011686 mRNA downstream 798016 21601149 ~ 21621853 (+) False XLOC_005926
TCONS_00011688 mRNA downstream 871312 21674445 ~ 21682873 (+) False XLOC_005927
TCONS_00011689 mRNA downstream 871317 21674450 ~ 21682874 (+) False XLOC_005927
TCONS_00011690 mRNA downstream 873102 21676235 ~ 21680891 (+) False XLOC_005927
TCONS_00011681 other upstream 458758 20248893 ~ 20249009 (+) True XLOC_005919
TCONS_00011680 other upstream 680683 20026967 ~ 20027084 (+) True XLOC_005918
TCONS_00011675 other upstream 1390997 19305824 ~ 19316770 (+) True XLOC_005914
TCONS_00011671 other upstream 1998404 18709249 ~ 18709363 (+) True XLOC_005912
TCONS_00011652 other upstream 2293363 18400901 ~ 18414404 (+) True XLOC_005901
TCONS_00011687 other downstream 806574 21609707 ~ 21621590 (+) True XLOC_005926
TCONS_00011702 other downstream 1070977 21874110 ~ 21885557 (+) True XLOC_005931
TCONS_00011703 other downstream 1085081 21888214 ~ 22095934 (+) False XLOC_005932
TCONS_00011706 other downstream 1247050 22050183 ~ 22050309 (+) True XLOC_005933
TCONS_00011711 other downstream 1319957 22123090 ~ 22123205 (+) True XLOC_005936