RNA id: TU257909


Basic Information

Item Value
RNA id TU257909
length 1663
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G190232
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15790725 ~ 15866179 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAACTTTAGAAGACAGATCATATGTCTTTAGTTGGTGCAAcaattaactattattattgttcattccttaattcctctgtgatgaggagatAAAATGATAGCTTTTTTCCCCTTAACTTTCATTTGATTTTTtccccattccaccttaaacgctGCAAACTCTTCCctccatctgttgcaccatatAGGTCcataaggtggaacgggaaagttagacAGATATCTAGCTAATAAGAGATTCTTTTTGAATGActtttctaaacaaaaatgccctaaaacattgaaactacccattaaactatagtaatatagtggttatcgCAATtttaaacaaggaaaatactaaAACTTGTGggttaaagcagcataaagttatccaaaagcagtgtgtaagactggtgaagaacATGCATGAAAGATgaagatgcaagaaaactgtgattaaaaaacagggttattccaccaaatactgtttttccagtgatTCTTATTGTCCTCTCTTAGGAGTtttcctctgaaaaaaaaaaGATGATTCTCCCTGTACTGAGCTGAGTCATGCACTCTCAAGAGGGGTATCTGGGCTAAGTGGTTGGGGCAAgaggtaaaatgggattgggccctaTATGGACCGGCTACACATACCGAACAAAAagtttctctttttgttttgtttgtcttttttgctgtttcttttctctttttttaactaatgCCTTTCAATCGTTCACTCAAAACACGCAAAAACTCGAACACTGTTACCTGTGGGACGCTGGCAGTGAAGCGTTACGGAGGTGGAGAGCGGTAGAATATGGAATAAAAACGAACAgagacttttaaaaaaaacatgtttttccaCACATATCTCAACATTTTCTACCTTTTCTTTGTGTACTccgtgtgctgtgtgtgtgtgtgtgagggacgGGAGCAGTCGGGCGATGACGGGGTCGATGCTGTTTTAGCGCGGATGCTAACGTTTTGAATAGCACTTGTCTCATTTTGTAAGTATTTCTTTATGTACATTATGTAACTACGGTTTGAATTTCTCGAGATCTATTGGAGACCAATATCAGCGGTGAAGAGATTTTGCTTTGCGAGcgttttactttttctttcgtTCTTTTCTATGTGTTTCATTCGTTTTTTGGactggttttgtttgtttgtttgtttgtttgtttgttcgttctctctttctctcgtttttTTTGTACTAATCGTATGTgcaatatgtatgttttttgtttggttttgtaaACGAACAGTTGCGAACTAGtggctgttttttcttttatttcttatcataataattgtatttaattctcaacaccccccccccccctcatccCTGTCGTCACAGTCCACACCCCCCAACCCACCCTACCGACCCCAAGTGtttcgtttttttgtttgtttgtttgtttgtttgttttttgtccgtctctctctctctgttctagCGACTTGCAGTGAGAAATATCAAATTAAAAGTACTCTTGCATGTAACATTATATTGTAAGAAATATTctctaaatattgtatattCCCAGAAATGATATTATTATCAGTGTTACAGTTGACTGTTGTTGAAATTGAAGTGATGatgataaaaaacattaaaactatgtAGAATTCTCTTCATGCGACTCGTCTTTTCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257895 lncRNA downstream 50533 15790725 ~ 15813783 (-) True G190232
TU257868 lncRNA downstream 65559 15718099 ~ 15798757 (-) True G190214
TU257846 lncRNA downstream 256411 15605716 ~ 15607905 (-) True G190204
TU257848 lncRNA downstream 258339 15597327 ~ 15605977 (-) False G190204
TU257841 lncRNA downstream 295045 15556521 ~ 15569271 (-) True G190199
TU257957 lncRNA upstream 42918 15909035 ~ 15909528 (-) True G190252
TU257962 lncRNA upstream 100378 15966495 ~ 15969045 (-) True G190257
TU257973 lncRNA upstream 129079 15995196 ~ 16002227 (-) True G190265
TU257976 lncRNA upstream 136147 16002264 ~ 16043340 (-) True G190268
TU257936 lncRNA upstream 148150 16014267 ~ 16016150 (-) True G190234
XM_022682459.1 mRNA downstream 13125 15846861 ~ 15851191 (-) True LOC103030277
XM_007243528.2 mRNA downstream 30595 15832088 ~ 15833721 (-) True LOC103047460
XM_007233856.2 mRNA downstream 39077 15814220 ~ 15825239 (-) True LOC103030908
XM_022682456.1 mRNA downstream 79662 15765883 ~ 15784654 (-) True acad9
XM_022682455.1 mRNA downstream 102714 15723299 ~ 15761602 (-) False efcc1
XM_022682469.1 mRNA upstream 3018 15869135 ~ 16138293 (-) False LOC103029523
XM_022682468.1 mRNA upstream 3018 15869135 ~ 16138293 (-) True LOC103029523
XM_022682467.1 mRNA upstream 654427 16520544 ~ 16556758 (-) True wnt7a
XM_022682463.1 mRNA upstream 703506 16569623 ~ 16599317 (-) True ptpdc1
XM_022682461.1 mRNA upstream 873170 16739287 ~ 16794230 (-) False phf2
TU257808 other downstream 407051 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 542145 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 2787800 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 3244750 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 3518934 12332545 ~ 12345382 (-) False mapkapk3
TU258141 other upstream 536674 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 967733 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 1322548 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 1351204 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 2273246 18139363 ~ 18213530 (-) False mrpl20

Expression Profile