RNA id: TU257962


Basic Information

Item Value
RNA id TU257962
length 2044
lncRNA type intronic
GC content 0.39
exon number 3
gene id G190257
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15966495 ~ 15969045 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taacagcacattcacactttcatcatctaataactagaaaaagactgTAGAGAACTCTACAGTAAAATCTATTTATAGTAGTTTTAAAGTCTTTactttaaagaaattacagatacataagccagagagcggtgagtactgtttctacaccttcaaataaagactcttagaaactggagttaaaaaaactgctacaggaagacgtctggctgacccacatggaaacagcagctttagcctttagctcagattaacatgattaaagaagaagaagaagaattagagttaatctgacaggagaagaagaactgcagtaataaaattcattaataaaataaagataaaatataaaagcagaTTGAACTTCTAAACTATTGGggttttctaaaatcttaatttttttttctccaccccACGTAAAGCTGATCTCATAGCCATGTTCCTCTGGGCTTTTTCCCTCAGAGTGACTCAACTCTGGACCCGAACACACCCCGAATCACAGCTCAACACTTCCACATTACAAATCCATCACAATGTTGCCAGATCCAGATGTTTTAAGCTTATTAAGGCTGATTATATCAGGCCACGTGTCGTATCTCAGACGCTGAACTGAACTCTGAACACTCCTGGCCTCATGCTCTGCTGGGAGTCCGGTCACACTTGGCCATGTTCTTGGATGCAGATCTCTGCCAAACCTCCCCCAAACACAAAGGAAATGAAACCCAAACAGATGATAACGGCTGAAATGAGAAAAACTGGAAAAAGTGAATTTTCTTGTTCAGAGGGAAAGTTTTAAAGCGTAGGATGCAGTTGATTAAAACCTCTGAGATGCTTCTTTCCATTACAACACTTTAGTTTGTTTGTCTGCTTGGGATGCTTTGTAGATTCTTAGTgttggacaaaatattgatatatcaatgtataatttttgtttacgatacattatcaatatggggcatcaaatatggatattttttatGACACATTGGCAATCTTAACCTTAACACAAGACCGAACTATGTCCATATTCTCAACTTAAGACCTGATCATAACCTTAATTCAAGACCGAAACATCACCTCAACTCAAGGCAGAACCGTAATTTCAGCTCAAGACCGAGCTACATTCTCAACTTAAGGCCAAACCGTTACCTCAACTCAAGATTGAACCATAACCTCAACTCAAGGCCCGAACCATATTCTCAACACAAGACCGAAAGTAACCTCAACTCAAGACCGAACCATAACCTCAATTTAAGATTGAACCATGACCTCAACTCAAGATTGAACCGTAACCTCAACTCAAGACCGAAAAATAACCTCAACTCAAGATTGAACCATAACCTCAACTCAAGATTGAACCATGACCTCAACTCAAGATTGAACCGTAACCTCAACTCAAGACCGAAAAATAACCTCAACTCAAGATTGAACCATAACCTCAACTCAAGATTGAGCCATAACCTCAACTCAAGACCGAACTTTAAACTCAACTCAAGATTCAACCATAACCTCAACTCAAGACCAAACCATCATTTTTGCACAAGACTGAACCATATTCTTAACACAAGACCGAACCATAACCTCAACTCAAGGCCAAAACCGTAACCTCAACTCAAGACCGAACTGTAACCTCAAATCAAGATGGAACCATAGTTTTAACTCGAGAGCGAACCATAACCTCAACTCGAAACCAAATCATATCCTTAACTCAAGACCAAACCGTAACCTCAACTCAGGACTGAACCATAACCTTAACTCAAGATTGAACCGTAACCTCAACTCAAGACCAAACCATAATTTTAGCACAAGACTGAACCATATTCTTAACACAAGACTGAACCATATTCTTAACACAAGACCAAACCATAACCTCAACTCAAGGCCAAACCGTAACCTCAACTCAAGACCGAACTGTAACCTCAATTCAAAGAACTCATTGAGAACTCAAGAGCGAACCATAGCCTCAACTCAAAACCAAATCATATCCTTAACTTAAGACCAAACCGTAACCTTGACTCAGGACTGAACCATAACCTTAACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257957 lncRNA downstream 56967 15909035 ~ 15909528 (-) True G190252
TU257894 lncRNA downstream 100316 15790725 ~ 15866179 (-) False G190232
TU257909 lncRNA downstream 100378 15864316 ~ 15866117 (-) False G190232
TU257895 lncRNA downstream 152712 15790725 ~ 15813783 (-) True G190232
TU257868 lncRNA downstream 167738 15718099 ~ 15798757 (-) True G190214
TU257973 lncRNA upstream 26151 15995196 ~ 16002227 (-) True G190265
TU257976 lncRNA upstream 33219 16002264 ~ 16043340 (-) True G190268
TU257936 lncRNA upstream 45222 16014267 ~ 16016150 (-) True G190234
TU257995 lncRNA upstream 81040 16050085 ~ 16075172 (-) True G190287
TU257998 lncRNA upstream 109971 16079016 ~ 16116363 (-) True G190290
XM_022682459.1 mRNA downstream 115304 15846861 ~ 15851191 (-) True LOC103030277
XM_007243528.2 mRNA downstream 132774 15832088 ~ 15833721 (-) True LOC103047460
XM_007233856.2 mRNA downstream 141256 15814220 ~ 15825239 (-) True LOC103030908
XM_022682456.1 mRNA downstream 181841 15765883 ~ 15784654 (-) True acad9
XM_022682454.1 mRNA downstream 206290 15723299 ~ 15760205 (-) True efcc1
XM_022682467.1 mRNA upstream 551499 16520544 ~ 16556758 (-) True wnt7a
XM_022682463.1 mRNA upstream 600578 16569623 ~ 16599317 (-) True ptpdc1
XM_022682461.1 mRNA upstream 770242 16739287 ~ 16794230 (-) False phf2
XM_022682462.1 mRNA upstream 770242 16739287 ~ 16794230 (-) False phf2
XM_022682460.1 mRNA upstream 770242 16739287 ~ 16794230 (-) True phf2
TU257808 other downstream 509230 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 644324 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 2889979 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 3346929 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 3621113 12332545 ~ 12345382 (-) False mapkapk3
TU258141 other upstream 433746 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 864805 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 1219620 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 1248276 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 2170318 18139363 ~ 18213530 (-) False mrpl20

Expression Profile