RNA id: TU311674


Basic Information

Item Value
RNA id TU311674
length 927
lncRNA type intronic
GC content 0.44
exon number 2
gene id G229271
representative True

Chromosome Information

Item Value
chromosome id NW_019170708.1
NCBI id APWO02000306.1
chromosome length 628061
location 379058 ~ 382250 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacacacacacgcagcacTTTCAGGAAAAACAGGCCTGTGAGCGTTTAACGGCGTCATCACAGGACTACAGTCCTGTTCTGTAATCTGCAGAAAGTCCTGAGTCCTGCCCTCTCTGTAAAGTGGTACAGGCTCGACCACAGGAAGGGGAGGGGCTTAAGACTGGTAGTTTCACtcatcctcaaaaaaaaaaacaaaaaaacaacagtcgCACCCAGAAGTTAGTGTTGgatagagctgcaactaattgttattttagtagtcgactaatctcaTGATTGTATttccgattagtcgattagtcattgattatttctgccatgttctccatctttaaaaatgatagaaacattACTAAGGAAATACCCAGAGAGATCGGACCTATGCTTCAAATGTCAGACACAGAGAGGTACATTTATTCACTCTTTTTGGACCTGTAATAAAATATCCATCATTCTGGAGGGAAGTGCATTTGGTTATTGAGGACATCTTCAGTATAAAATGAGCTATATTCCCCTCACTGTATTTTCCTGAATGCCCAGTTGAGACAAGTGGTCTTCCAAACAAGCCCCATCATTGACCTCACGGCTCTCTCAGTTGACATCTCTCCTTTCTCTTGAGAAACTGACTTATGACCTCCGCCAGAGGTCCTTGAGTTTCTGGTGGGTATGGTCCCCTCTCTGGAACCCAAGATCTGGAAGATCCTCTGAGAGACTACCTTCTGTGCCTTTGTATCCTATAggggttgtacaatgaaactgaagcacctggttttagagGCTCATGTTCAGTGAAGCCCTTCAGGTGAAGGGTGGCACTGTACCCTCTGTACCCGTCAGTATCAGtaggtaacagcagcagcagtggggTTTATCAGTAGTAGAGTAGTGTAAGTGTGTAGTTtctgatgagtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311672 lncRNA downstream 84 377375 ~ 378974 (-) True G229270
TU311670 lncRNA downstream 6554 372055 ~ 372504 (-) True G229268
TU311667 lncRNA downstream 9903 368692 ~ 369155 (-) True G229267
TU311618 lncRNA downstream 23148 352473 ~ 355910 (-) True G229234
TU311665 lncRNA downstream 32901 313504 ~ 346157 (-) False G229265
TU311675 lncRNA upstream 18930 401180 ~ 401612 (-) True G229272
TU311615 lncRNA upstream 26206 408456 ~ 507946 (-) True G229231
TU311679 lncRNA upstream 31582 413832 ~ 495959 (-) False G229273
TU311682 lncRNA upstream 98750 481000 ~ 494237 (-) False G229274
TU311684 lncRNA upstream 98750 481000 ~ 493085 (-) False G229274
XM_022685590.1 mRNA downstream 229275 143901 ~ 149783 (-) True LOC111196372
XM_022685600.1 mRNA upstream 22300 404550 ~ 420783 (-) True LOC103026596
XM_015602868.2 mRNA upstream 69867 452117 ~ 470964 (-) True LOC103036421
XM_022685598.1 mRNA upstream 116019 498269 ~ 518817 (-) True LOC103036123
XM_022685588.1 mRNA upstream 146153 528403 ~ 546704 (-) False tbc1d24
XM_022685589.1 mRNA upstream 146153 528403 ~ 545045 (-) False tbc1d24
TU311617 other downstream 155745 173215 ~ 223313 (-) True G229233

Expression Profile