RNA id: TU311679


Basic Information

Item Value
RNA id TU311679
length 306
lncRNA type read_through
GC content 0.31
exon number 2
gene id G229273
representative False

Chromosome Information

Item Value
chromosome id NW_019170708.1
NCBI id APWO02000306.1
chromosome length 628061
location 413832 ~ 495959 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctttctgtctctctctctctcacttcacaCTTCTGTCACTCATCCTTCACATCATCCATCACTTCTATATTTGCCCCTTTTTCTTTTGATCCTTTGTTTTGATACTATTCTTTTGataatttctttttatatatttttggctTTCACCTTtccccttttttttgctttttgtttttgttatttttgtggaGTTTAAGCATCATATTTGAGACTTTTTGAATTTTATGGGTAGTTTGTAGaattgtttgtgtttctgtttttcatgTTGTGATATTAAAGTGAGGTTTAAAAgtcaaagtctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311675 lncRNA downstream 12220 401180 ~ 401612 (-) True G229272
TU311674 lncRNA downstream 31582 379058 ~ 382250 (-) True G229271
TU311672 lncRNA downstream 34858 377375 ~ 378974 (-) True G229270
TU311670 lncRNA downstream 41328 372055 ~ 372504 (-) True G229268
TU311667 lncRNA downstream 44677 368692 ~ 369155 (-) True G229267
TU311723 lncRNA upstream 13898 509857 ~ 510167 (-) True G229293
TU311709 lncRNA upstream 28512 524471 ~ 528387 (-) False G229287
TU311711 lncRNA upstream 28512 524471 ~ 528387 (-) True G229287
TU311728 lncRNA upstream 58960 554919 ~ 555164 (-) True G229298
TU311713 lncRNA upstream 89643 585602 ~ 589097 (-) True G229288
XM_022685599.1 mRNA downstream 11228 309323 ~ 402604 (-) True LOC103022950
XM_022685590.1 mRNA downstream 264049 143901 ~ 149783 (-) True LOC111196372
XM_022685598.1 mRNA upstream 2310 498269 ~ 518817 (-) True LOC103036123
XM_022685588.1 mRNA upstream 32444 528403 ~ 546704 (-) False tbc1d24
XM_022685589.1 mRNA upstream 32444 528403 ~ 545045 (-) False tbc1d24
XM_022685587.1 mRNA upstream 32444 528403 ~ 545045 (-) True tbc1d24
XM_022685602.1 mRNA upstream 65947 561906 ~ 568087 (-) True LOC103029896
TU311617 other downstream 190519 173215 ~ 223313 (-) True G229233

Expression Profile