Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012079 |
| length | 905 |
| lncRNA type | retained_intron |
| GC content | 0.38 |
| exon number | 3 |
| gene id | XLOC_006134 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 34689663 ~ 34750299 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051604 | protein maturation | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| ko01002 | Peptidases and inhibitors |
| id | description |
|---|---|
| ZDB-GENE-070424-242 | Predicted to enable threonine-type endopeptidase activity. Predicted to be involved in protein maturation. Predicted to be active in cytoplasm. Orthologous to human TASP1 (taspase 1). |
| ensembl_id | ENSDART00000136424 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013635 | lncRNA | upstream | 727198 | 33715276 ~ 33968528 (+) | True | XLOC_006132 |
| TCONS_00012056 | lncRNA | upstream | 1448151 | 33246212 ~ 33247575 (+) | True | XLOC_006118 |
| TCONS_00013409 | lncRNA | upstream | 1590498 | 33104911 ~ 33105228 (+) | True | XLOC_006116 |
| TCONS_00013634 | lncRNA | upstream | 1778800 | 32906643 ~ 32916926 (+) | True | XLOC_006112 |
| TCONS_00013408 | lncRNA | upstream | 2587254 | 32105265 ~ 32108472 (+) | True | XLOC_006103 |
| TCONS_00013636 | lncRNA | downstream | 53904 | 34752174 ~ 34753090 (+) | False | XLOC_006135 |
| TCONS_00013410 | lncRNA | downstream | 53904 | 34752174 ~ 34772595 (+) | False | XLOC_006135 |
| TCONS_00013637 | lncRNA | downstream | 53904 | 34752174 ~ 34797693 (+) | False | XLOC_006135 |
| TCONS_00013639 | lncRNA | downstream | 53904 | 34752174 ~ 34798133 (+) | False | XLOC_006135 |
| TCONS_00013638 | lncRNA | downstream | 53904 | 34752174 ~ 34798133 (+) | False | XLOC_006135 |
| TCONS_00012075 | mRNA | upstream | 136805 | 33703784 ~ 34558921 (+) | False | XLOC_006132 |
| TCONS_00012074 | mRNA | upstream | 1000430 | 33689740 ~ 33695296 (+) | True | XLOC_006131 |
| TCONS_00012073 | mRNA | upstream | 1005046 | 33688474 ~ 33690680 (+) | False | XLOC_006131 |
| TCONS_00012071 | mRNA | upstream | 1005734 | 33651416 ~ 33689992 (+) | True | XLOC_006129 |
| TCONS_00012072 | mRNA | upstream | 1036841 | 33655404 ~ 33658885 (+) | True | XLOC_006130 |
| TCONS_00012083 | mRNA | downstream | 640912 | 35339182 ~ 35390095 (+) | True | XLOC_006138 |
| TCONS_00012084 | mRNA | downstream | 774533 | 35472803 ~ 35481843 (+) | False | XLOC_006139 |
| TCONS_00012085 | mRNA | downstream | 775965 | 35474235 ~ 35481790 (+) | True | XLOC_006139 |
| TCONS_00012087 | mRNA | downstream | 830337 | 35528607 ~ 35538624 (+) | False | XLOC_006141 |
| TCONS_00012088 | mRNA | downstream | 830337 | 35528607 ~ 35610118 (+) | True | XLOC_006141 |
| TCONS_00012076 | other | upstream | 269361 | 34426248 ~ 34426365 (+) | True | XLOC_006133 |
| TCONS_00012045 | other | upstream | 1710957 | 32984654 ~ 32984769 (+) | True | XLOC_006113 |
| TCONS_00012044 | other | upstream | 1849117 | 32846493 ~ 32846609 (+) | True | XLOC_006111 |
| TCONS_00012037 | other | upstream | 2303227 | 32392383 ~ 32392499 (+) | True | XLOC_006105 |
| TCONS_00012034 | other | upstream | 2918200 | 31769821 ~ 31777526 (+) | True | XLOC_006100 |
| TCONS_00012081 | other | downstream | 184976 | 34883246 ~ 34883370 (+) | True | XLOC_006136 |
| TCONS_00012082 | other | downstream | 271249 | 34969519 ~ 34969645 (+) | True | XLOC_006137 |
| TCONS_00012108 | other | downstream | 1893924 | 36592194 ~ 36606932 (+) | False | XLOC_006151 |
| TCONS_00012134 | other | downstream | 2975908 | 37674178 ~ 37674294 (+) | True | XLOC_006162 |
| TCONS_00012135 | other | downstream | 3452247 | 38150517 ~ 38150637 (+) | True | XLOC_006163 |
