RNA id: TCONS_00013762


Basic Information

Item Value
RNA id TCONS_00013762
length 2386
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_006480
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11442838 ~ 11445780 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caggggGAGGGGTTGGTCTTCATACAAGCTGCTGCACATTTTCCCAGGTCCAACCCACGCCTTTACTGGAGCACCAGCCAGACATTAAAGCAGCATCTACactcacgctcacacacacacacacacacacgctcactcactcacactcatccGGACACTATACTCAATCCACAGACCTCACGCACTGGAAAACATGTTTCCACCCACACCAGCATCTACAGTAAATAAGATTATTGAACTGAATGCAGAAACACAAACAGCGTCTCACCAATCTGCACGTCGTCACCGCTCTGGCAATCCCGCCAGAAGTTTCTGACaggaaagaaaataataaataaactggcACAGAGAGGTTAAGGTTCTTATAATTTATTGCAGTTTGCACACAATTTAAAAATTTCACCAACAGCACACCAAAAGTACAAAACTAAACAGCCTCATAATTTACTTCCCTTGAGAAAATGAAACGTACTATGATTGTCAAAGCTAAATGTCTAAATCCATAAAAAGAACAATGTCAACATAGCAAAAAAATCTCAGAAGGGAAGCAATTACATGTGAAGTCcaatcctttttattttattttatcattttttttaaattccagaCAGCGATTGTCTCTGAATTTACCATATATTTTCTTCTTTCCCGTTTGATTTTGACAAACAACTGTTCTTCACACTGGGTTCCTGGGTTCAAGTAAACTAAAGGGGTGTCTAATTTATGGATATGCTTCATAGGCCATTTCACAGCTTCATTTCCATTGaacaaaagtcaaaacaaaaataaaagacatcCAGAATTCCAGCGACAGTTTCCAGTTTTCACCCTCTGAGTATAAGCTGATAACAGTAGTTTAAGGCGGTCAAGTACAACAGAAGCCAacgaaataaaataagaataaaagaaagCGTAGAAAACAAAATCAACCCCAgagttgatctttttttttttttctgtcacattGTAGAGTGCAAAAGGTAAAAGTACCACCGTGCAAAACGCCATGAGGAGCGTGCGCTGTTGGCAAAGCTCAACCTTTTCACTAGCCGTTGCACCAGCCAAATATATGGTAGGACAGTTCCTGAGGCCTGCGTAGGCCCGTGTGCCGCACACTCCTGTCCTGCCGGAAACATGTGCGGAGCCCCCCGGCCCTCTCTAACTAAAGTAGTTCAAGCATTTCAGCTCTATGTGAGTGACTGATCTACGTCTACAGTGCTAAGACATATGTTTTCTTTGCTTTTAACTTCTCCGGATTTAACAGTGAAAGTGTTTTGTGAAACAAACcgacaaacaaaataaacaatgtgtTAACATTCCTAAAATGAAACCTTAATATAATGAATTTAAAGGAAacaaaagtatacatttttaaaataaaatcacaaatgcTGCAAAAACAACTTATCAAACAATCATAAATTgatagattttttctttttttttttcagtgtaacgaAGTCAATTCGATCCTTCAGCTTTCTCCAAATAGATGTGCGCTGCTGAGGACACCCATAAAGAAGAGCTGCACCATCAGCCACGCAAATGTGTCTTCGTGGCAATCAAATCTGAAGCAAGTGCCAAttgaaaagataaataaataaattacaaacagaGCCGACATGATTCAAATGACAACAGCCAGTAAACAGGACACTGAGACGAACAGCAGTTGAGGACCCAGCACTGGAAAGAGCAGCGCGAGGAGATGCTAGCAGGAGCAACGCTAGCCTTGTGAACAATTAATGCAGCGCTTCTGCCTCTGCAGACACCTGGCCCCTCGTTAACCTCTGAATCCTACGAAATGAATCGCTTCATGTGTGTAGATACTGCAGAGCCTAATGTCAGTGCATTTCCACATTCTTCAcagcccagaaaaaaaaaaaaaacacccccgaTTCTTTCTCTAATGAGACGATAAAACTCAAATCTACCAAGGAATCGAATgagttaattaaaaaatacactctCTGATGCAAAACAACAACGAAAATAAGAGTAAGTTAAATAAAATTCATGCAATTTCTACAGCGGTAATATTAAAGGTACTTTTTTTCTCAACAGACAGGTGCCCTGACTGCAATGAATCAGTCAATTACAGTGTACAGCAATACAGCAAGTCACATCTTTTTCAATATACAGGTCAGACATCATGCAACAACAGATTCcgttttaaaaacgaaaaaagTCTCAATAAAACACTACAGAAATCTCTAGAAATGCAGCTGATGTAAAAACCAACCTCAGTAGCAAACGAGCGCAACTAAAATGCCAAAACGACTTCAAATCATATTAAGGAAGGATagagagaaataataataataataatgcagcaACTGATGTGAAAAAGGAGGCTGTACATTGCATGAGTGCCTTGTTTGTCTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013465 lncRNA downstream 64446 11353140 ~ 11378392 (-) False XLOC_006479
TCONS_00012570 lncRNA downstream 64483 11377446 ~ 11378355 (-) False XLOC_006479
TCONS_00013761 lncRNA downstream 1095948 10331102 ~ 10346890 (-) False XLOC_006472
TCONS_00013760 lncRNA downstream 1095951 10275286 ~ 10346887 (-) False XLOC_006472
TCONS_00012552 lncRNA downstream 1095958 10333719 ~ 10346880 (-) True XLOC_006472
TCONS_00013466 lncRNA upstream 671723 12117113 ~ 12118250 (-) True XLOC_006497
TCONS_00012599 lncRNA upstream 1033878 12479268 ~ 12486058 (-) False XLOC_006499
TCONS_00012600 lncRNA upstream 1034092 12479482 ~ 12486008 (-) False XLOC_006499
TCONS_00012602 lncRNA upstream 1038957 12484347 ~ 12486050 (-) True XLOC_006499
TCONS_00013467 lncRNA upstream 1141607 12586997 ~ 12587412 (-) True XLOC_006502
TCONS_00012568 mRNA downstream 64483 11175208 ~ 11378355 (-) False XLOC_006479
TCONS_00012569 mRNA downstream 64711 11353138 ~ 11378127 (-) False XLOC_006479
TCONS_00012565 mRNA downstream 369874 10981779 ~ 11072964 (-) False XLOC_006478
TCONS_00012567 mRNA downstream 394775 11038090 ~ 11048063 (-) True XLOC_006478
TCONS_00012564 mRNA downstream 407418 10980755 ~ 11035420 (-) False XLOC_006478
TCONS_00012572 mRNA upstream 44563 11489953 ~ 11536951 (-) True XLOC_006481
TCONS_00012574 mRNA upstream 132017 11577407 ~ 11578304 (-) True XLOC_006483
TCONS_00012575 mRNA upstream 136552 11581942 ~ 11667661 (-) False XLOC_006484
TCONS_00012576 mRNA upstream 141249 11586639 ~ 11644806 (-) True XLOC_006484
TCONS_00012577 mRNA upstream 225577 11670967 ~ 11671690 (-) True XLOC_006485
TCONS_00012571 other downstream 64544 11378016 ~ 11378294 (-) True XLOC_006479
TCONS_00012566 other downstream 420732 11020274 ~ 11022106 (-) False XLOC_006478
TCONS_00012560 other downstream 530236 10912486 ~ 10912602 (-) True XLOC_006476
TCONS_00012550 other downstream 1177933 10264741 ~ 10264905 (-) True XLOC_006471
TCONS_00012548 other downstream 1323903 10097851 ~ 10118935 (-) False XLOC_006467
TCONS_00012573 other upstream 120346 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012589 other upstream 529062 11974452 ~ 11974568 (-) True XLOC_006492
TCONS_00012595 other upstream 660388 12105778 ~ 12105894 (-) True XLOC_006496
TCONS_00012597 other upstream 932825 12378215 ~ 12389563 (-) True XLOC_006498
TCONS_00012601 other upstream 1035988 12481378 ~ 12485992 (-) False XLOC_006499

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU803575 True 777 lncRNA 0.37 1 CI01180000 9151374 ~ 9152150 (+)