RNA id: TCONS_00013465


Basic Information

Item Value
RNA id TCONS_00013465
length 1318
lncRNA type sense_over
GC content 0.47
exon number 4
gene id XLOC_006479
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11175208 ~ 11378392 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCCTCAGTGCACGCAGTAGCGGAGCAGAGCGCCTCTGGAGCGGTGTGGTGTGGGCAGGCGGGAGACAGAGCAGCTGAGCCAGGCGCGGACTAGAGCAGGAGACGCGGGCTGACAGAGAGGGTAACCTGCCGAAGACGCCGCTGTGTGCTGTGTCTGAGCGGCGGTTCCCGGGGCGTGCTTCTCCGATTATCCCGTCCATCCTCGCTCCCTCCTAGCCTGTAAAGAGGACGAGCACTTACCCAGGGAGGCAGGGGAAGCACTTTGGTCTCCCTACCAGTGCcagGCTGAGTCACTGTCGAGGAGTGGGAAGAtctagagagaaagagagagagagagcatcacGAAGAGAAAAGCAACGGAAGGAGGGGAAAACCACTACACAACGCCTTTGAGAGCGAAGCGAGAGAGAGAAGGACGTAAAGAGAGAGCagtgagggagggagagagagagacgctgaGGCTGGGAGAACTGACCCCCCTCCCCTCTCCTCCTTCCCCCCTCCTCACTCCTCCAGGAGCTGCTGTGCTGGAGCAGCGGGTACAGAGTGACTGAGGCAACATGAGCGATGTCACCGTCGTCAAGGAAGGCTGGGTCCAGAAGAGAGagCACCTGTGTCGCAGTACAAGTTTTCACCCCCCCTCCCTTTCTTCGTCTTCCAAGCTGTGActttttagaaaacaaaaacccaaaacaaaacaagctATGTGGGAGAAGTGGATAACCAAAAGGGTGACATCATTTCCTGTTTACTCCAGTAATGAATGGATCACAAAGAAAAGGGCCAGCTTAAGACATTGAAACCCCTCGGTTGTGACATCGCCTCCCTTTTAATTCTCATTGTCTAAACATTCCCTTCATCACAGACCGCAGCCTGTTTAACATGCTAGTCTATGTTTGATCACATTTGAAAATCATGCACCATATTGAACTGTCATGGAACTAAATAGCATGAAGTTTTCATTTTCAAATCTTTAATTTGATGTAGTTTTGCTTTCCAGATCACTGGTCCGTGGAAAATTAGTGCTGATTGCAAACAGACCTGTTGATGAGAATGCTTTGAATGCCTGCGCTCTGTGTCTGCATATGcatactggttttggtggttaaTAATGACACAATTTTTGTAATGACATGGACAttcttgtgtcctcataattcataacaaaataaaaaataatacatttacaaaatcaaattcatacatgcaaagcactattcacatttacaaaatcaaattcgtaggttcaaaacacaattcataaatacacaaatccaaattatgaattcaaaacacaattcaaaaatgcacaaatcc

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013761 lncRNA downstream 1006250 10331102 ~ 10346890 (-) False XLOC_006472
TCONS_00013760 lncRNA downstream 1006253 10275286 ~ 10346887 (-) False XLOC_006472
TCONS_00012552 lncRNA downstream 1006260 10333719 ~ 10346880 (-) True XLOC_006472
TCONS_00012551 lncRNA downstream 1006891 10287702 ~ 10346249 (-) False XLOC_006472
TCONS_00013464 lncRNA downstream 1100106 10250174 ~ 10253034 (-) True XLOC_006469
TCONS_00013762 lncRNA upstream 64446 11442838 ~ 11445390 (-) False XLOC_006480
TCONS_00013763 lncRNA upstream 64446 11442838 ~ 11445780 (-) True XLOC_006480
TCONS_00013466 lncRNA upstream 738721 12117113 ~ 12118250 (-) True XLOC_006497
TCONS_00012599 lncRNA upstream 1100876 12479268 ~ 12486058 (-) False XLOC_006499
TCONS_00012600 lncRNA upstream 1101090 12479482 ~ 12486008 (-) False XLOC_006499
TCONS_00012565 mRNA downstream 280176 10981779 ~ 11072964 (-) False XLOC_006478
TCONS_00012567 mRNA downstream 305077 11038090 ~ 11048063 (-) True XLOC_006478
TCONS_00012564 mRNA downstream 317720 10980755 ~ 11035420 (-) False XLOC_006478
TCONS_00012561 mRNA downstream 407746 10926528 ~ 10945394 (-) False XLOC_006477
TCONS_00012562 mRNA downstream 407774 10926828 ~ 10945366 (-) False XLOC_006477
TCONS_00012572 mRNA upstream 111561 11489953 ~ 11536951 (-) True XLOC_006481
TCONS_00012574 mRNA upstream 199015 11577407 ~ 11578304 (-) True XLOC_006483
TCONS_00012575 mRNA upstream 203550 11581942 ~ 11667661 (-) False XLOC_006484
TCONS_00012576 mRNA upstream 208247 11586639 ~ 11644806 (-) True XLOC_006484
TCONS_00012577 mRNA upstream 292575 11670967 ~ 11671690 (-) True XLOC_006485
TCONS_00012566 other downstream 331034 11020274 ~ 11022106 (-) False XLOC_006478
TCONS_00012560 other downstream 440538 10912486 ~ 10912602 (-) True XLOC_006476
TCONS_00012550 other downstream 1088235 10264741 ~ 10264905 (-) True XLOC_006471
TCONS_00012548 other downstream 1234205 10097851 ~ 10118935 (-) False XLOC_006467
TCONS_00012547 other downstream 1238260 10080027 ~ 10114880 (-) False XLOC_006467
TCONS_00012573 other upstream 187344 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012589 other upstream 596060 11974452 ~ 11974568 (-) True XLOC_006492
TCONS_00012595 other upstream 727386 12105778 ~ 12105894 (-) True XLOC_006496
TCONS_00012597 other upstream 999823 12378215 ~ 12389563 (-) True XLOC_006498
TCONS_00012601 other upstream 1102986 12481378 ~ 12485992 (-) False XLOC_006499

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU135248 True 249 lncRNA 0.41 1 CI01000021 5847643 ~ 5847891 (+)
tiger barb (Puntius tetrazona) TU135248 False 2354 lncRNA 0.47 4 NC_056711.1 6279559 ~ 6291443 (+)