RNA id: TCONS_00012575


Basic Information

Item Value
RNA id TCONS_00012575
length 8610
RNA type mRNA
GC content 0.44
exon number 28
gene id XLOC_006484
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11581942 ~ 11667661 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCGCGGGCGGTGAGTCTCTCCTGCTGTGCGTGACGTCGCGCTCCTCAGGAAGTAGCTGTCACGTCCACATTGTGCGGGAATAGACACAACACAGCACCAAAAACGCCACGACGACAAGCAGCGGCAGCAGCAGAATGAGTTCAGATGGAGGTGGGCGTCCTGTTAAGGTGGGCTCTTTGGTTGAAGTCATCGGTAAAGGTCACAGAGGCACCGTGGCTTACATCGGAAACACCCTCTTCGCTTCTGGAAAATGGGTGGGAGTCATTCTGGATGAACCCAAAGGCAAGAACGATGGGACTGTGCAGGGCAAACGATATTTCCTCTGTCAGGAGAACCATGGCATATTTGTCCGCCAATCACAGATTCAGTTAGTAGAAGATGGGGCAGATACGACATCTCCTGAAACGCCTGAAGCCCTCACCTCCAAAATGCTGAAGCGAGAGATAATTGAAGGCCTAAAGTCAAACAAAGTGACCACCACCAGAAGGCCCAAGcaaacgcGGGCCGGTGTAGGGGTGAAGGTGGGCTCTGGATCGGCTTCTGCAGGAGAGATGAGCAGCAGTGAACCCAGCACTCCTGCACAAACACCACTGGCTGCTCCAGTTATTCCTTCACCTGTGGGAGCGCTGCCCTCGCCTGGAGCTCCTCCAATCCCGGGACCCAGCAAGGAAGAGGAGTCTCTGCGCGCGCTGGTGAAGGATCTGGAGGAGAAGCTGGAGACGCTGAAGATGAAGAGGACAGAAGACAAGGCGAAGCTGAAGGAGCTCGAGAAGCACAAGATTCAGCTGGAGCAGCTGCAGGAGTGGAAGAGCAAGATGCAGGAACAGCAGAACGAGCTGCAGAAACAACTCAAAGAGGCCAAGAGGGAAGCTAAAGAAGCTCTTGAAGCTAAAGAGCGTTACATGGAGGAGATGGCAGATACAGCAGATGCCATTGAAATGGCCACACTGGATAAAGAGATGGCTGAAGAGAGAGCCGAGTCACTGCAGCTTGAAGCCGACGCGCTCAAAGAGAGAGTGGACGAGCTCACCATGGACTTGGAGATACTGAAACATGAGATAGAGGAGAAAGGTTCAGACGGAGCAGCGTCTAGTTATCATGTGAAGCAGCTGGAGGAGCAGAACGCTCGACTGAAGGAGGCGCTGgtgagGATGCGTGACTTGTCGGCATCAGAGAAACAAGAGCATGGAAAGCAACAGAAACTGATGGAGAAGAAGAATTTCGAGCTGGATGCGCTAAGATGCCACAAAGAGAAACTTCAGGAGGAGATGAAGATGGCTGAGAAAACCATTGATGAGCTCAAAGAGCAGGTGGATGCGTCTCTCGGAGCAGAGGAGATGGTGGAGATGCTGACGGAGCGTAATCTGGACCTGGAGGAGAAAGTGCGCGAGCTCAGAGAAACGGTCGCTGATCTGGAAGCCATCAATGAGATGAACGACGAGCTCCAGGAGAACGCCAGAGAGACAGAGCTGGAGCTCAGAGAGCAGCTGGATCTGGGCGCTGCTGGCGTCAGGGAGGCGGAGAAGAGGGTGGAGGCGGCACAGGAAACTGTGGCAGACTATCAGCAGACCATCCAGAAATACAGAGAGCTCACAGCAAATCTGCAGGAGGTAAACAGGGAGCTGATGAGCCAGCAGGAAGCCAATTCTGAGCAGCAACAACAGCCTGCAGAGATCTTTGATTTCAAGATCAAATTTGCTGAAACCAAAGCCTACGCCAAGGCCATAGAAATGGAGCTGCGTAAAATGGAGGTGATTCAAGCCAACAGACAGGTGTCACTGTTGATTTCCTTCATGCCTGACTCCTTCCTGAAACACAGAGGAGACCATGACTGCATCCTGGCACTTCTTCTCATCCCACGGCTCATCTGTAAGTCAGAGCTGATCAGCAAGCAGGCGCAGGAGAAGTTTGAGCTGACAGAGAGCTGCTCTCAGAAGCCTGGCATGAGAGGAGCTGTTGGAGAGCGTCTGAGCTTTGCTGCGGGACTCATCTATTCTCTCACACTACTACAGGCAGCGCTGCACAAATATGAACATGCTCTGAGTCAGTGCAGTGTGGATGTGTATAAGCGTGTGGGCTCTCTGTACTCGGAGTTGAGCGTTCATGAGCGATCCCTGGATTTCCTCATTGACCTGCTGTACAAAGACCTGCTAGACGAAACCGTCAATGTGGAGCCTCTTACCAAAGCTATTAAATACTATCAGCACCTCTACAGTATTCATCTGGCTGAGCAGCCTGAGGACTGTACCATGCAGCTGGCAGATCACATAAGATTCACCCAGAGTGCTCTGGACTGTATGGCGGTGGAGGTGGGCCGTCTGAGGGCCTTCATACAGACAGGACAGGACGAGGAGGCGTTTTGTGTGCTGCTGAAGGATCTGGACACATCCTGTAGTGACATACGGCAGTTCTGCAAGAAGATCCGCCGTCGAATGCCAGGCACCGATGCACCAGGAATCCCAGCTGCCCTCAGCTTCGGCCCACAGgtgtgcgAGGCGCTGGCGGACAGTAGAAGACAGCTGGCCTGGGTGAATGCCGTCCTCCAGGAAGTGGCAGCAGCAGCCGCTCAGCTTATCGCTCCTCTCAGCGAACATGAGGGACTTCCAGCAGTCAAACTGGAGGACATGGCCTTTAAAGCAGCCGAGCAGatctatGGGTCGCAGGGCATAAACGCCCAAGAGTGTCTGCGCCAGTCCTGCAGCGTTGTCATTGCAACCATGAACAAGATGGCAACCGCTATGCAGGAGGGCGAATATGACTCTGACAGACCACAGACTGGGATATCTCCTGTTGAAGTCCGAGCTGCAGCACTGAGGGCAGAAATCACTGATGCTGAAGGACTCGGTCTCAAACTTGAAGACAGAGAAACAGTCATCAAAGAGCTCAAGAAATCTCTGAAAATAAAGGGCGAGGAACTGAGTGAGGCCAATGTACGTCTCAGTTTGCTGGAGAAGAAGCTGGACAGTGCATCTAAAGATGCAGATGAGCGAGTGGAGAAGATCCAGGCTATCTTAGATGAGACTGATTCACTTCTGAAAAAGAAGGAGAAGGAGTTTGAGGAGACCATGGATGCTCTCCAGGCTGACATAGACCAACTAGAGTCAGAGAAAGTAGAGCTAAAGCATAGAATCAGCAGCCAGTCAAAGATGACCATTGAGAGCCTGAGAGGAAGTCAAGCGTCTGGCATCGCCTCCATTGTGACCTGTGGCATCACTGCTGAAGAACAAAAAGGTGTGTGTGCGGCAGCAGGACTGCAGGTGATTGATTCTCCACTGCTCACTCAGCAGATTGAAGCTCAGAGACTCAGTATAAAACACTTGAAGAATGAAAACAACAGACTGAAGGCGGAAAGGATGCGTGCTCAGCTGGCGTCTCTCCCTCCTCTGAATGTGCCAAAGCTGGGCTGGCGAGAGGGCTGCAGGCCTGAGGTGTTGTCCAGCGCCCTCTACCGCAAAACTGATCAACTGCTGGACACGCTGCTCCAGATGAGTGCCAATGTGAAAGTGGTGGACATCACCGGGAGATCTCCAGTGAGTCCCAGTGCACAGCTTCTAGAGCAAACAGCGCGACTGCAGTCACTCAATGACACTCTCGATAGGCTCAAGGTAAAACAAAAATGTCTCCAAATTCACAGTAATGTTTCTCGTATTGACTGGAATAACAtacaatttatttctttaaaggATGAGGTTGCTGAACATGTAGTGACTCACAGGCCTGGCGCTCAAGTTTCATCTGATTTTGCCACTTTTCCCTGCACCTCTTTTGTAAAGGCAAAGGAGGAGAAGAGAGGAGATGCTGTGTTAGTGGGTCGTGTGATGATGCCCTGCGCTCGAGGACAGGAGCAGGTGCATCGGCTGGTGCtttcacaaacacaaatacacagagTCCATCGCCTTCTCCAGACTTAACATAAACGCAAACCAAAAAAACCAAACCTAAAGTCAGTATCCAAAACATGAgaatacaaaaacacacaagtATCTGTGGCCACAAACCAAGAACCATCATAACAATATATGCTTCATTACTGTAGCTCACACAAGCATCTGTAAAGCCACAATTTGTACAAAAGGACATGCTGAGGACATCAGATGTTAAACCTGGCATGAGATGGATGATACAGCATGACTCCTGCTAATTTAcactttaagggatagttcacacaaaaatgaaaattgtcatcattttactttttttttgcttgttccaaaaatgtttgagtttcttctgctgaacacaaacaaagatatactgaagaatgtaaaaaaactttcatagtatttttttgttcctaATATGGATGTCAAGGGTGTAACGATACGCATATTCGAAAAGTGTAGACTaaacatctaaaaagataaaagggaataagtacaaaatataatgttttcagtgcaacaacgcttaacatggcatcccaaatgacgtggcagacaacatgctgccttccccgctgTCATCTTAAACAGTAGACCATtgcttttgaactcagaatatcactttattaaagcatgcactcaTTAGCAATCTTGCTAGCTTCTCTGTCAGCCTGGCTGCTAGTGCTGGCTTCGCCCCCGATGCCCCAGCAACACTGCATCCCCGACACAAAAGAGCcaacctccaaacactactccatTCACGCGGtacactagctcgcaaaatggctagtaacgttaatgtaatcccagacatcccaagtctcccggaagactcctggatgcctgcaaacgaatgataatcttctggaaatcgcgcgtctcttCCCAGGTCCTTAAATATgtcgcacacccctctccaccgcatccctcccagctcttcaggtacattgGGCACAACTCAACCCAGCCGCTCAGGTACAACGCACGCACACGCCTCCACCACTCTTCAGATATGTTGCGCACTATCACCGCTACCAAGAGAGTGGTGGAAAAAAACATCTGAGAGATCTTAATCGGTAATGAAAATGtcgggttttaagaaaatgttaaatgtaataaagccccgttacattattccttcataagcccatttcagtcagataattcctgctttcagatccactgaaatggcaggtgaccgtcaaatcaagcagatctgtgccgtctgaggaaaaggtggacactcatctttctgaaaataaaaaaatacttaaaaattgattgaaactgagctccatataaaaactaaattgttcttttctttttatttgtttcactTCTACAAtattatgttgatttttttataagcagctttttggttttgagtataaagaaggatttgttttatttgctgctaagcagaaaccccggAAGTATAGCTCTaccactgtttaaagtaaaagaaaaaaaacaggatcatacttttatgatgttagttttaatacattaaaaaattaaatcaaaggaATCctttggcttttttctttttttgctgtatcgaaaacgtaccgaaccgtgatttttgtgaaccgttacacccctattgTCAATGCGTcatttttcccaacattcttcagaatattttgttttgtgttcaacaaaggaACGAAGTTTATAAAAGTTTACAACCATTTGTtgtaatgttcatttttgggtgaagtatcctTTTAACTTCTGTCTTTCTCTTACTTTGGAATATCATTAattctttaatattattaatataattcgaaccatatacagtacagtatgtgtttatttaaatgatcatgACTTAACAATTTTCAGCCGATGGAaattaaaacagcaaaaacaacacTATAAATTGAAGAGGAGTCACATGATTTGACCAGTAAACAATCAACTGAATACCTAGCAACTACTTGGCTGTTGCACTGCAATAAAAACCAATCAAAACAATAAACCTTAAAGCAACATTCTGCTACACGCAGCACCCGATCATCGCGCCACTGATTTTGCATTACACAATAACTGCTCGCGTTACTATCAGAAAATGACAAAATCAAGTTGGCCTCTCGAGAACTGGCAGTAGTATTAACGGTTGTTTTGCTAATCTTCGTGAATGAGATTGAGATTTCAATTTGAAATCAATGTCAATGGAAGATTAATGCGAGGGCAGAAGATTTTGCATCCTTTTTATTCTAAAAAACGTTTGCTTTTGGAGTTGTGTGAAAAGTAGTAAATGtgaataatgtgaaataaaaacgcATTTGCTGAACAAACTCTGACGTAGCGAACATTACAACCACGTCTCTATcatgcttgctttgtttactgtatTGCTAGATTACCAATACTAGTCAGCCACTCGAATGGGGTGTTCACACTGGACGCGGCCTACGCTATTAAATCATGCTATTTGTCCAAAATTGGATGCTTGAACATTACGTTTACTCGCTtaatttctgtgtgaaatttacTTCACAACAGATGTAAAACTGCTTCAGTTTTGTTGCAAAAAGCTGACATGAAGTTTGTTGTGAGGGTAGCTTTGCTTTATGTGCTACGGAAGGCTGATAAACATCATGGACTCAATCGGCACTGTTTCTGGGTCCATCAGAGGCGCACCCAGACTTGGTTGAGTTTCACCAACTCCTACATGAGCTGCTTATGGAGCTGTTGTCGGGCCATAAAAGTTACACGGTACGAGCCCGagaagtacattttgattgatagttttttaaaagcctaaacccgtttacagcccaacattattcaaatgtaCACATGCACGCAgatcttttgcctttttttcaagaatgagctgtttatatgtgttttaacataatttattcataacgtAGGATATAGACCACTTGGAAGttgaaacaaagaaataaaataagtcctctgtaacatcgtaactcTCAGCATTCTAAATAGGCTTATGTACATAGGCTACAcatagcctttaaattggccaaaacaccaataaaatttgtattttctaacaaagtaaattaaaataaaacgggtatttggcaataacgaagTTAGGATAAAGGCTCTGCAGGATTTATTTTGCCACTTCTCTGCACAAGCTGAACATTATGTGAATAGCTGCGCTGACTGATGGTGCATCCAGCAGCACTGAATACCTTTTTACTGCTGGCCGTCATGCATACAGTATTActactgatctggctaattttgcaagttttgggtaggattgtttgttcatcttccaccagccaaGTACACCCCTTTTATTGTCTATGACAGCGTTTTCAATGTAGCAAGTGACCTTGTCATTTTTCCACTACGCAAAATTGGCTCTACTTCTCTGTCATTATTTGTTTTACCTTCGCAAAGATGGATTTTGatgttgtaacaaacaatttgattGCTTTCTCAcactaatcgaaatgcatcacatgactgttcatttaccgCACAAGCCCGAGCCCGGCCCGATCCTGTCTGAAATGATAGAATTTAAGCCCAAACCCGTCGGGTTAGCTTTAATCTAGATAACAGCGCTACTAGAACAATCTTCTGAATGGTTTACATGGTGCGAATTTTCGGCAAAGTTCATAATTGTTAACCCGAGGAATTGATGTGAATTATGCCTTATGAGTGTCAAACACCCGAAATGCTTAATTTGAGTCATGCCATTCGGTTGAATCGCATTGTTCGCATAGCCTCATTCACACGAATCAGGCcttatgagtagggccagacggaatctgcggatgttttttgctatttctgtggagaattttggtaaacatctgcggatttctgcagaattattttggcagtatcataactaaaaccttaatatgttcaataaaaaaatatctttgtaacttttatttatgtttaaaatgcaaatctaattagattcactttatttggtaaacaaagcaagtctctcatataatatatctactaaaagacagaaaataaatatagatattacacacatatacaattaaataaacagaattaataatgggctaaaaatctgcagaattctgcgaaaaatctgcgcacgcagattccgtgtgggcttaCTTATGAGTGTCAAATGCCCAAAACGCTCATTTCCACGCCGTGTCATTTGCACGGATAGAATCGTTCGCACCACCTCATTTGCGAGAATCTCACTGCAGGATGTCTgtcacatctttgcattgacttaacatgtaaatcactcgcgcttcatctccgtctggtgtgaacgcaccaACTTGTTGGACACGCACTCTAATTCGTATTTAATTACAATCATACACACAAAATAGTCCAGAAAAACATTTACCATAACAGCTAAAGATTTACCAGCCCTGTGTGCTTTTCTGCAATGCCTGAACGTGCCACACCATTGTGCTTTTAtaaaggaaatacagttgtcctTTTAGAGCGAATGATCAAACAAGTCCCAGCAGGGACaaggcaaaacaacaacaaagaggaCAGTAGACAATATTTAACCTTAACTGTTGTATATTTGCTACATGAGATTGTCAGTATTCAAGTGTTCTTAAGTCAGCAGTGGTTTGCTCTGTTACTATTGTGTAAGTTATTAACCTATTAACTGTGTCAAACCCACACCATTGCTTGAAGTATCATTGAATGTGTTGCCATCTTACGTGTATACATCATGTGagtgaattaatttaaataaattattatgccaatga

Function

GO:

id name namespace
GO:0010970 transport along microtubule biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0007097 nuclear migration biological_process
GO:0000776 kinetochore cellular_component
GO:0030424 axon cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005875 microtubule associated complex cellular_component
GO:0035371 microtubule plus-end cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051010 microtubule plus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-28 Predicted to enable microtubule plus-end binding activity. Acts upstream of or within camera-type eye photoreceptor cell differentiation. Predicted to be located in cytoskeleton. Predicted to be part of microtubule associated complex. Predicted to be active in several cellular components, including axon; kinetochore; and microtubule cytoskeleton. Is expressed in nervous system and trunk. Human ortholog(s) of this gene implicated in Perry syndrome; amyotrophic lateral sclerosis type 1; and distal hereditary motor neuronopathy type 7B. Orthologous to human DCTN1 (dynactin subunit 1).

Ensembl:

ensembl_id ENSDART00000102411

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013763 lncRNA downstream 136162 11442838 ~ 11445780 (-) True XLOC_006480
TCONS_00013762 lncRNA downstream 136552 11442838 ~ 11445390 (-) False XLOC_006480
TCONS_00013465 lncRNA downstream 203550 11353140 ~ 11378392 (-) False XLOC_006479
TCONS_00012570 lncRNA downstream 203587 11377446 ~ 11378355 (-) False XLOC_006479
TCONS_00012552 lncRNA downstream 1235062 10333719 ~ 10346880 (-) True XLOC_006472
TCONS_00013466 lncRNA upstream 449452 12117113 ~ 12118250 (-) True XLOC_006497
TCONS_00012599 lncRNA upstream 811607 12479268 ~ 12486058 (-) False XLOC_006499
TCONS_00012600 lncRNA upstream 811821 12479482 ~ 12486008 (-) False XLOC_006499
TCONS_00012602 lncRNA upstream 816686 12484347 ~ 12486050 (-) True XLOC_006499
TCONS_00013467 lncRNA upstream 919336 12586997 ~ 12587412 (-) True XLOC_006502
TCONS_00012574 mRNA downstream 3638 11577407 ~ 11578304 (-) True XLOC_006483
TCONS_00012572 mRNA downstream 44991 11489953 ~ 11536951 (-) True XLOC_006481
TCONS_00012568 mRNA downstream 203587 11175208 ~ 11378355 (-) False XLOC_006479
TCONS_00012569 mRNA downstream 203815 11353138 ~ 11378127 (-) False XLOC_006479
TCONS_00012565 mRNA downstream 508978 10981779 ~ 11072964 (-) False XLOC_006478
TCONS_00012577 mRNA upstream 3306 11670967 ~ 11671690 (-) True XLOC_006485
TCONS_00012578 mRNA upstream 7103 11674764 ~ 11679486 (-) True XLOC_006486
TCONS_00012579 mRNA upstream 22616 11690277 ~ 11696553 (-) False XLOC_006487
TCONS_00012580 mRNA upstream 23220 11690881 ~ 11699530 (-) True XLOC_006487
TCONS_00012582 mRNA upstream 47208 11714869 ~ 11743973 (-) False XLOC_006488
TCONS_00012573 other downstream 16079 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012571 other downstream 203648 11378016 ~ 11378294 (-) True XLOC_006479
TCONS_00012566 other downstream 559836 11020274 ~ 11022106 (-) False XLOC_006478
TCONS_00012560 other downstream 669340 10912486 ~ 10912602 (-) True XLOC_006476
TCONS_00012550 other downstream 1317037 10264741 ~ 10264905 (-) True XLOC_006471
TCONS_00012589 other upstream 306791 11974452 ~ 11974568 (-) True XLOC_006492
TCONS_00012595 other upstream 438117 12105778 ~ 12105894 (-) True XLOC_006496
TCONS_00012597 other upstream 710554 12378215 ~ 12389563 (-) True XLOC_006498
TCONS_00012601 other upstream 813717 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012615 other upstream 1919635 13587296 ~ 13590570 (-) True XLOC_006510

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_09078339_09100675.mRNA True 4772 mRNA 0.48 26 CI01180000 9078339 ~ 9101643 (+)