RNA id: CI01000000_04355381_04356090.mRNA



Basic Information


Item Value
RNA id CI01000000_04355381_04356090.mRNA
length 410
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01000000_04355381_04356090
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4355381 ~ 4356143 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCCTGTAATAATATGTTACTGACTCTCAGCATTAAGATGATGAATATTGTTCTTACTCTCGGATTATCATCCAATAAGAAAGTGACTGGTGCTGATCTGGGCGGTCTGTTGGATCTTGAGACTCTGTATCAGGGCGTGGAACGCAGTATTAACCAGAGCCGACGAGCCCGCAGACAGTCCCCTGAACGAGCCTACAACATTGAGGTTTTGCTGGGGGTGGACGACTCCGTGGTGCAGTTTCATGGACAGCAACATGTGGAGAAGTACCTCCTCACTCTTATGAACATCGTAAGTGTGCTCGAGCCACCCACGCTGCCTGTTGTGTTTGGGTTACCCTCGAGAAAAATCAAAGAATGATAGAAACTACTCTGTCAACAACAGCAATTCTACAGGCATAAGACAGCATTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2701 lncRNA upstream 153980 4201178 ~ 4201401 (+) True G2427
TU2694 lncRNA upstream 163027 4192124 ~ 4192354 (+) True G2420
TU2672 lncRNA upstream 207558 4144989 ~ 4147823 (+) True CI01000000_04138020_04144928
TU2564 lncRNA upstream 235519 4118584 ~ 4119862 (+) True G2294
TU2565 lncRNA upstream 262029 4090435 ~ 4092402 (+) True G2295
TU3061 lncRNA downstream 67573 4423716 ~ 4423954 (+) True G2752
TU3065 lncRNA downstream 69252 4425395 ~ 4425738 (+) True G2755
TU3088 lncRNA downstream 99849 4455992 ~ 4456314 (+) False G2776
TU3090 lncRNA downstream 99903 4456046 ~ 4456314 (+) True G2776
TU3095 lncRNA downstream 107396 4463539 ~ 4463768 (+) True G2780
CI01000000_04225109_04225608.mRNA mRNA upstream 128765 4225109 ~ 4226616 (+) True CI01000000_04225109_04225608
CI01000000_04165348_04197615.mRNA mRNA upstream 157560 4165285 ~ 4197821 (+) True CI01000000_04165348_04197615
CI01000000_04149689_04156988.mRNA mRNA upstream 197904 4149689 ~ 4157477 (+) True CI01000000_04149689_04156988
CI01000000_04138020_04144928.mRNA mRNA upstream 210351 4138020 ~ 4145030 (+) False CI01000000_04138020_04144928
CI01000000_04090995_04093696.mRNA mRNA upstream 261636 4090547 ~ 4093745 (+) False CI01000000_04090995_04093696
CI01000000_04368179_04392483.mRNA mRNA downstream 11696 4367839 ~ 4392990 (+) True CI01000000_04368179_04392483
CI01000000_04451252_04452143.mRNA mRNA downstream 94987 4451130 ~ 4453011 (+) True CI01000000_04451252_04452143
CI01000000_04462428_04462831.mRNA mRNA downstream 106285 4462428 ~ 4463112 (+) True CI01000000_04462428_04462831
CI01000000_04547587_04562715.mRNA mRNA downstream 191444 4547587 ~ 4562837 (+) True CI01000000_04547587_04562715
CI01000000_04576065_04586515.mRNA mRNA downstream 219922 4576065 ~ 4586881 (+) True CI01000000_04576065_04586515
TU678 other upstream 2446573 1815453 ~ 1908808 (+) False G579
TU531 other upstream 2922527 1425121 ~ 1432854 (+) True G435
TU431 other upstream 3678444 671842 ~ 676937 (+) True G350
TU325 other upstream 3848309 503209 ~ 507072 (+) True G252
TU3086 other downstream 97635 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 369843 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 5848688 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 6071080 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 6622346 10978489 ~ 10980872 (+) True G7018

Expression Profile