RNA id: TU17237


Basic Information

Item Value
RNA id TU17237
length 319
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G15416
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4797476 ~ 4797794 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGGTAGCAACGTTTTAGGTTCTACGGATTTAACTTAAATTTACAGTAAAATACCGTATTTCATTAACTGATATAATGTTAATTTTCTAACATATTGAAGAACTAATATCTGTTTTGTACCTTTATAATACACTGACAACCACCAAACACAGTGGTGATGAGAGTCACATGATGAATCAAAGTTCATCACAAGCTGAGAAGGACAATACTAATATATAGAAGGTCATTCACACAAACACTAAACACCAAAACATCAATTTAACTACATTAGATGTAACATAAAACCCTAATGTACATAACTGATTAGAAAAAAAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17216 lncRNA upstream 39057 4753717 ~ 4758419 (+) True G15395
TU17194 lncRNA upstream 70736 4598677 ~ 4726740 (+) False G15389
TU17240 lncRNA downstream 3179 4800973 ~ 4801530 (+) True G15419
TU17642 lncRNA downstream 137577 4935371 ~ 4935990 (+) True G15789
TU17657 lncRNA downstream 205376 5003170 ~ 5003390 (+) True G15798
TU17659 lncRNA downstream 208028 5005822 ~ 5006037 (+) True G15800
TU17671 lncRNA downstream 243572 5041366 ~ 5041565 (+) True G15812
CI01000001_04779079_04792659.mRNA mRNA upstream 4649 4778937 ~ 4792827 (+) True CI01000001_04779079_04792659
CI01000001_04773238_04776581.mRNA mRNA upstream 20147 4772701 ~ 4777329 (+) True CI01000001_04773238_04776581
CI01000001_04723418_04724292.mRNA mRNA upstream 73118 4723418 ~ 4724358 (+) False CI01000001_04723418_04724292
CI01000001_04701645_04713999.mRNA mRNA upstream 83323 4701645 ~ 4714153 (+) True CI01000001_04701645_04713999
CI01000001_04688934_04700615.mRNA mRNA upstream 96772 4688934 ~ 4700704 (+) True CI01000001_04688934_04700615
CI01000001_04901365_04901652.mRNA mRNA downstream 103481 4901275 ~ 4902567 (+) True CI01000001_04901365_04901652
CI01000001_04914279_04922772.mRNA mRNA downstream 116356 4914150 ~ 4923679 (+) True CI01000001_04914279_04922772
CI01000001_04936808_04943256.mRNA mRNA downstream 139014 4936808 ~ 4943455 (+) True CI01000001_04936808_04943256
CI01000001_04950531_04960550.mRNA mRNA downstream 152737 4950531 ~ 4960695 (+) True CI01000001_04950531_04960550
CI01000001_04962494_04971921.mRNA mRNA downstream 164700 4962494 ~ 4972231 (+) True CI01000001_04962494_04971921
TU16602 other upstream 1176025 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3126472 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 3752324 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 4305419 490574 ~ 492057 (+) True G12653
TU14066 other upstream 4313066 478386 ~ 478781 (+) True G12670
TU17650 other downstream 263424 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 263424 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 488955 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 914091 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2734778 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781

Expression Profile