RNA id: TU20100


Basic Information

Item Value
RNA id TU20100
length 222
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G17904
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7247059 ~ 7248321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGGAGGTGTAGGAGTGGAGGAAGGCCGTCCCCCAGGTGGGGTTGGGTTCCGACTCCCACCCACCCCTGATAATATCTCGTCTGTGACATCCTTGCCGCCCTGGTTGGGGTCTCGGATGCGGATCTTGGAGGATGTTTTCTTTTCCCTCTTAGCAGGTGGAGGTTGTTGTGGTGTAGGCATTATGATGGGTGTAGATGGTGTGTACATGGGCTGCCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20064 lncRNA downstream 178667 7068180 ~ 7068392 (-) True G17874
TU19979 lncRNA downstream 247353 6995068 ~ 6999706 (-) True G17794
TU20029 lncRNA downstream 297686 6948630 ~ 6949373 (-) True G17839
TU20028 lncRNA downstream 306356 6938912 ~ 6940703 (-) True G17838
TU19973 lncRNA downstream 329432 6914459 ~ 6917627 (-) True G17791
TU20136 lncRNA upstream 15148 7263469 ~ 7267952 (-) True G17911
TU20156 lncRNA upstream 88135 7336456 ~ 7338325 (-) True G17922
TU20163 lncRNA upstream 103763 7352084 ~ 7352631 (-) True G17929
TU20175 lncRNA upstream 147343 7395664 ~ 7399215 (-) True G17941
TU20208 lncRNA upstream 193996 7442317 ~ 7444112 (-) True G17968
CI01000001_07137510_07187079.mRNA mRNA downstream 59980 7137510 ~ 7187079 (-) True CI01000001_07137510_07187079
CI01000001_07121674_07129337.mRNA mRNA downstream 117722 7121674 ~ 7129337 (-) True CI01000001_07121674_07129337
CI01000001_07071090_07114820.mRNA mRNA downstream 132239 7071008 ~ 7114820 (-) True CI01000001_07071090_07114820
CI01000001_06983345_06990659.mRNA mRNA downstream 256400 6983085 ~ 6990659 (-) True CI01000001_06983345_06990659
CI01000001_06965170_06976281.mRNA mRNA downstream 270778 6965071 ~ 6976281 (-) True CI01000001_06965170_06976281
CI01000001_07270003_07290702.mRNA mRNA upstream 21364 7269685 ~ 7290768 (-) True CI01000001_07270003_07290702
CI01000001_07311570_07321107.mRNA mRNA upstream 62340 7310661 ~ 7321370 (-) True CI01000001_07311570_07321107
CI01000001_07382559_07385351.mRNA mRNA upstream 133906 7382227 ~ 7385630 (-) True CI01000001_07382559_07385351
CI01000001_07399727_07402300.mRNA mRNA upstream 151324 7399645 ~ 7403682 (-) True CI01000001_07399727_07402300
CI01000001_07492000_07496973.mRNA mRNA upstream 243101 7491422 ~ 7496973 (-) True CI01000001_07492000_07496973
TU19985 other downstream 309836 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU19958 other downstream 356645 6837525 ~ 6890414 (-) False G17789
TU18776 other downstream 631470 6584480 ~ 6615589 (-) False G16753
TU18669 other downstream 899104 6344104 ~ 6347955 (-) True G16664
TU18440 other downstream 2017474 5222777 ~ 5229585 (-) True G16462
TU20141 other upstream 2990 7251311 ~ 7253254 (-) False G17911
TU20273 other upstream 508180 7756501 ~ 7757520 (-) True G18023
TU20485 other upstream 677783 7926104 ~ 7928517 (-) True G18223
TU21059 other upstream 2561336 9810938 ~ 9820896 (-) True G18754
TU22623 other upstream 3290706 10539027 ~ 10539850 (-) True G20136

Expression Profile