RNA id: TU21301


Basic Information

Item Value
RNA id TU21301
length 324
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G18967
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10434219 ~ 10434542 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATGTTGGAAACAGTTGTGCTGCTTAATATTATTTTATAACCTGTGATACTTTTTCAGGATTCATTGATGAATAAAAAGTTAAAAAATATCAGCATTTATTTAAAATAGAAATCTTTTGTAACAATATACACTACCGTTCAAAAGTTTGAGGACAGTCATTTTGAATGAAAGAAATTAATACTTTTATTCAGCACAGATGTGTTAAATTGATAAAAAGTGATAGTAAAGATTTATATTGTTAGAAAAGATTTATATTTTGAATAAATGCTGTTCTTTTTAACCTTTTATTCATCAATGAATCCTGAAAAAAGTATCACAGGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21285 lncRNA upstream 459 10432095 ~ 10433760 (+) True G18951
TU21284 lncRNA upstream 1810 10431957 ~ 10432409 (+) False G18951
TU21204 lncRNA upstream 30309 10402230 ~ 10403910 (+) True G18882
TU21194 lncRNA upstream 42621 10390688 ~ 10391598 (+) True G18876
TU21200 lncRNA upstream 90098 10340037 ~ 10344121 (+) True G18878
TU21302 lncRNA downstream 1228 10435770 ~ 10435995 (+) True G18968
TU21303 lncRNA downstream 2111 10436653 ~ 10436873 (+) True G18969
TU21256 lncRNA downstream 2784 10437326 ~ 10440371 (+) True G18929
TU21264 lncRNA downstream 50606 10485148 ~ 10487561 (+) True G18933
TU21346 lncRNA downstream 64091 10498633 ~ 10500815 (+) True G19011
CI01000001_10420931_10426716.mRNA mRNA upstream 7072 10420318 ~ 10427147 (+) True CI01000001_10420931_10426716
CI01000001_10395420_10396473.mRNA mRNA upstream 37746 10394851 ~ 10396473 (+) False CI01000001_10395420_10396473
CI01000001_10328133_10329110.mRNA mRNA upstream 105109 10328040 ~ 10329110 (+) True CI01000001_10328133_10329110
CI01000001_10321783_10325266.mRNA mRNA upstream 108914 10321647 ~ 10325305 (+) True CI01000001_10321783_10325266
CI01000001_10150798_10152858.mRNA mRNA upstream 281281 10150373 ~ 10152938 (+) True CI01000001_10150798_10152858
CI01000001_10525795_10530510.mRNA mRNA downstream 88720 10523262 ~ 10530543 (+) True CI01000001_10525795_10530510
CI01000001_10538498_10539667.mRNA mRNA downstream 103846 10538388 ~ 10539702 (+) False CI01000001_10538498_10539667
CI01000001_10573770_10582123.mRNA mRNA downstream 139228 10573770 ~ 10582238 (+) True CI01000001_10573770_10582123
CI01000001_10582439_10582802.mRNA mRNA downstream 147836 10582378 ~ 10582821 (+) True CI01000001_10582439_10582802
CI01000001_10590766_10595793.mRNA mRNA downstream 155894 10590436 ~ 10596238 (+) True CI01000001_10590766_10595793
TU21193 other upstream 37514 10393557 ~ 10395953 (+) True G18875
TU21188 other upstream 152850 10271146 ~ 10281369 (+) True G18872
TU21190 other upstream 173505 10257112 ~ 10260714 (+) True G18873
TU21219 other upstream 192727 10239900 ~ 10241492 (+) True G18896
TU19459 other upstream 996156 9418328 ~ 9438063 (+) True G17334
TU21268 other downstream 40442 10474984 ~ 10476389 (+) True G18937
TU21318 other downstream 103930 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21319 other downstream 103930 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21382 other downstream 416382 10850924 ~ 10853983 (+) True G19039
TU21702 other downstream 1066652 11501194 ~ 11558673 (+) True G19314

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1773690 True 1407 lncRNA 0.36 1 NC_048582.1 42345906 ~ 42347312 (-)