RNA id: TU43604


Basic Information

Item Value
RNA id TU43604
length 315
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G38477
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4110784 ~ 4111098 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAGAGACCTTGCGCTCCTCCACCTTCTGTTTGAGGATGCCCCACAGATGCTCAATAGGGTTTAGGTCTGGAGACATGCTTGGCCAGTCCATCACCTTTACCCTCAGCTTCTTTAGCAAGGCAGTGGCCGTCTTGGAGGTGTGTTTGGGGTCGTTATCATGTTGGAATACTGCCCTGCGGCCCAGTCTCTGAAGGGAGGGGATCATGCTCTGTTGGCATTCATGGTTCCCTCAATGAACTGTAGCTCCCCAGTGCCGGCAGCACTCATGCAGCCCCAGACCATGACACTCCCACCACCATGCTTAACTGTAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43578 lncRNA downstream 44900 4065640 ~ 4065884 (-) True G38451
TU43577 lncRNA downstream 46019 4064498 ~ 4064765 (-) True G38450
TU43336 lncRNA downstream 56974 4053494 ~ 4053810 (-) True G38223
TU43325 lncRNA downstream 83836 4026733 ~ 4026948 (-) True G38212
TU43294 lncRNA downstream 130159 3960045 ~ 3980625 (-) True G38183
TU43615 lncRNA upstream 23341 4134439 ~ 4134741 (-) True G38488
TU43616 lncRNA upstream 24572 4135670 ~ 4135978 (-) True G38489
TU43617 lncRNA upstream 25138 4136236 ~ 4136442 (-) True G38490
TU43538 lncRNA upstream 79353 4190451 ~ 4190705 (-) True G38411
TU43540 lncRNA upstream 80412 4191510 ~ 4194985 (-) True G38413
CI01000005_03986570_03989555.mRNA mRNA downstream 121229 3986099 ~ 3989555 (-) True CI01000005_03986570_03989555
CI01000005_03714714_03715575.mRNA mRNA downstream 395143 3714273 ~ 3715641 (-) True CI01000005_03714714_03715575
CI01000005_03530548_03573901.mRNA mRNA downstream 536003 3530249 ~ 3574781 (-) True CI01000005_03530548_03573901
CI01000005_03494256_03497235.mRNA mRNA downstream 611767 3494077 ~ 3499017 (-) True CI01000005_03494256_03497235
CI01000005_03439939_03442430.mRNA mRNA downstream 667591 3439939 ~ 3443193 (-) True CI01000005_03439939_03442430
CI01000005_04161239_04162612.mRNA mRNA upstream 49874 4160972 ~ 4163246 (-) True CI01000005_04161239_04162612
CI01000005_04296779_04299727.mRNA mRNA upstream 185540 4296638 ~ 4299785 (-) False CI01000005_04296779_04299727
CI01000005_04332499_04357527.mRNA mRNA upstream 221392 4332490 ~ 4358857 (-) True CI01000005_04332499_04357527
CI01000005_04401277_04428207.mRNA mRNA upstream 290150 4401248 ~ 4428207 (-) True CI01000005_04401277_04428207
CI01000005_04443111_04445092.mRNA mRNA upstream 331955 4443053 ~ 4445092 (-) True CI01000005_04443111_04445092
TU41481 other downstream 2221508 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 2221508 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41598 other downstream 2446505 1663267 ~ 1664279 (-) False G36628
TU41601 other downstream 2446505 1663267 ~ 1664279 (-) True G36628
TU40958 other downstream 3067112 1021295 ~ 1043672 (-) True G36049
TU43637 other upstream 93747 4204845 ~ 4206208 (-) True G38510
TU43542 other upstream 270140 4381238 ~ 4401110 (-) True G38415
TU44762 other upstream 1722694 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 1722694 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 2369591 6480689 ~ 6483489 (-) True G40190

Expression Profile