RNA id: TU45492


Basic Information

Item Value
RNA id TU45492
length 250
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G40135
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7612925 ~ 7613174 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAAAGTAAAAAAAAAAAAAAAAAAGCAAATGTTTTAGTCCATCTTGAACTATCTTCAGTGCATGAAATTTTACAAGTAATACACAGCATTTAAATGATCAAGGCAGCGCTCAGAGACATCAGATGATTAGTTGGATCAGCTGGATAAATGACCAGTTACCAATCAACCAACCACATGGGTGCAGCAAAGGTACAAACAATACAGAGAAAGAAGAAAAAGAAAAAAAAAAGATACAGGGCCTTCCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45488 lncRNA upstream 5029 7607551 ~ 7607896 (+) True G40131
TU45446 lncRNA upstream 182590 7430106 ~ 7430335 (+) True G40101
TU45425 lncRNA upstream 246054 7366611 ~ 7366871 (+) True G40085
TU45423 lncRNA upstream 247374 7365270 ~ 7365551 (+) True G40083
TU45422 lncRNA upstream 247719 7364986 ~ 7365206 (+) True G40082
TU45494 lncRNA downstream 2357 7615531 ~ 7615915 (+) True G40137
CI01000005_07600541_07600974.mRNA mRNA upstream 11616 7600541 ~ 7601309 (+) False CI01000005_07600541_07600974
CI01000005_07552713_07574463.mRNA mRNA upstream 38462 7552713 ~ 7574463 (+) True CI01000005_07552713_07574463
CI01000005_07516913_07529647.mRNA mRNA upstream 83278 7516673 ~ 7529647 (+) True CI01000005_07516913_07529647
CI01000005_07500131_07513279.mRNA mRNA upstream 99616 7497065 ~ 7513309 (+) True CI01000005_07500131_07513279
CI01000005_07474381_07477140.mRNA mRNA upstream 135237 7474381 ~ 7477688 (+) True CI01000005_07474381_07477140
TU45443 other upstream 9961 7597989 ~ 7598810 (+) True G40098
TU45244 other upstream 614585 6997544 ~ 6998340 (+) True G39930
TU43730 other upstream 2876068 4735346 ~ 4736857 (+) True CI01000005_04735429_04736817
TU42433 other upstream 3889422 3722744 ~ 3723503 (+) True G37392
TU41224 other upstream 5951893 1659733 ~ 1661032 (+) True G36291

Expression Profile