RNA id: TU45446


Basic Information

Item Value
RNA id TU45446
length 230
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G40101
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7430106 ~ 7430335 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAGCATTAATTCGATCTCAAACCAATTCATCCACCACCTGCATGAAAAAATTTGCGACAATACGGTTTCAGGAAACAGTCGTGACCGGCTAATTTTTTCAACGATATCGTATACTGTATGGTAGTGAAGCAGCGAGTTATGTCGTTGTACGGCACCCCAGAAGAGCTGATGAACTCAGAGCCAGGAGAAGATAACCATAATTAGAAGTGACTTCTAGAGCCAGTGATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45425 lncRNA upstream 63235 7366611 ~ 7366871 (+) True G40085
TU45423 lncRNA upstream 64555 7365270 ~ 7365551 (+) True G40083
TU45422 lncRNA upstream 64900 7364986 ~ 7365206 (+) True G40082
TU45421 lncRNA upstream 67181 7362513 ~ 7362925 (+) True G40081
TU45419 lncRNA upstream 103246 7326659 ~ 7326860 (+) True G40079
TU45488 lncRNA downstream 177216 7607551 ~ 7607896 (+) True G40131
TU45492 lncRNA downstream 182590 7612925 ~ 7613174 (+) True G40135
TU45494 lncRNA downstream 185196 7615531 ~ 7615915 (+) True G40137
CI01000005_07402067_07403893.mRNA mRNA upstream 26213 7401811 ~ 7403893 (+) True CI01000005_07402067_07403893
CI01000005_07384171_07397440.mRNA mRNA upstream 32423 7383741 ~ 7397683 (+) True CI01000005_07384171_07397440
CI01000005_07368883_07371354.mRNA mRNA upstream 58052 7368883 ~ 7372054 (+) True CI01000005_07368883_07371354
CI01000005_07337613_07348597.mRNA mRNA upstream 81509 7337613 ~ 7348597 (+) True CI01000005_07337613_07348597
CI01000005_07330665_07337161.mRNA mRNA upstream 92945 7330665 ~ 7337161 (+) True CI01000005_07330665_07337161
CI01000005_07447222_07447972.mRNA mRNA downstream 15665 7446000 ~ 7448298 (+) True CI01000005_07447222_07447972
CI01000005_07452398_07471837.mRNA mRNA downstream 22063 7452398 ~ 7472606 (+) True CI01000005_07452398_07471837
CI01000005_07474381_07477140.mRNA mRNA downstream 44046 7474381 ~ 7477688 (+) True CI01000005_07474381_07477140
CI01000005_07500131_07513279.mRNA mRNA downstream 66730 7497065 ~ 7513309 (+) True CI01000005_07500131_07513279
CI01000005_07516913_07529647.mRNA mRNA downstream 86338 7516673 ~ 7529647 (+) True CI01000005_07516913_07529647
TU45244 other upstream 431766 6997544 ~ 6998340 (+) True G39930
TU43730 other upstream 2693249 4735346 ~ 4736857 (+) True CI01000005_04735429_04736817
TU42433 other upstream 3706603 3722744 ~ 3723503 (+) True G37392
TU41224 other upstream 5769074 1659733 ~ 1661032 (+) True G36291
TU41148 other upstream 5892302 1503143 ~ 1537804 (+) True G36223
TU45443 other downstream 167654 7597989 ~ 7598810 (+) True G40098

Expression Profile