RNA id: CI01000005_07384171_07397440.mRNA


Basic Information

Item Value
RNA id CI01000005_07384171_07397440.mRNA
length 4783
RNA type mRNA
GC content 0.46
exon number 18
gene id CI01000005_07384171_07397440
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7383741 ~ 7397683 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATAAAAACAACAGAAGCCAATGGAAAATCTCCACAATGATACCATGAAAAACTGAGTAATTCCTGTTCCTATGTTTAATGCAGTATTGTACATGATGAGCGTTTCAAAAGACACACGAAGCGGCTGATTAATTAGATCTTCCCTTCAATATTTATACATTTTCAAAGCATTAGGAGTCACATGGAATATCATGATCATGTTAAGTGTACGACTGAACTTTGGTCCAAGTCATAAATGCGTTTCCCGATCAGTGAAGTAATAAGGATGTTGAGTTGAGAAGAATCTCGCAGATCTTTGGACTCTTTTACAACCGTGCTCTGGTTGAAATTGCACTCATCACTCAAGGTGAGATTTAAGTCATCTGTCAGTCTGTTAACCTCCACATAACTCAGTTCTGGTTAATGGAGTGAGCGACTCCGCGTTCGGATATGGAGGAACTGAAGCAGAGGAGACAAAAGAGAGAAGGCCGTCACAGAGACACCTGGGACCCCTTCCAGTTGAACCCGATCGGAGCCGAGAAAGAGAAGAAGAGAACATGCTTCCGAATTCTGCAGAACCTGGTGGCTGTTATTGTGGGCCTGCTGGTGCTGGTCAGCGGCGTCGTGAGCAAGGGATCTCTGCTGGTCCTGACCACTCTGTCCAGTCCAGTGTCTTTGAGAACCGAAGTGGAACAGCAGTTCTACACGCTGCTGTTGATGTGTGTCCTAGTGACGCCAAACCTCCTGATGTTCCTGAAGTCTCTGTGGAAGTGTCTCTTCAAGAGTTATGTGGCTCCTAACCCAAAGACACTGGGAATCATGTGTGTGATTGAGAGTCTGGTGGCGGTCGGGACGGCAGTTCTGGTGCTCATTGTGATGCCTAAGCTTGATATCCTCACAAACCTCTGCATCCCTGGAGGGATCTGCATCCTTTCGGCCGTGTTCCAGATCGCCTTCCGCTTGCAGACAAGGAGCTGGATGATCATCTACCCCATATGCTCCCTCATCCTAGTGCTCAGCGGATACACTCTACTGGTGATTGACTACTACGTAAGAGAGTCCACATTTGTCCCAGAACAAATGGAAGGTTTTTATGTATATATCGGCATTGGGATTTTTGCATCAGTGCTGGTTTCGCTGAACTGGTGGGAGAACCCTTTTCAGGCCAGCACAAACATTCAGGAGATGCTCAAGGATTTGGACTCTTTCAGAGACTCTGTTTATCTGTTTACCAGCCTCCTTCGAATAGCTGTGACTCTGGGGGTGTACTTTCTGTATTTCTGCCTGATTGCTAACACTCCCATCGACTGGGACGCGTACACCCAAGCCAGTAAAGGAGCTGTAGAGATAGGCCTTGGGCTGTTTTTCCTGCAGGCGTTCTGCTCTGCCGCGTGCCACTGGTTTGGAGTCGTGGCCTGCAAGATCCACGCTGTGAGATTTGGTTTTGCCCTGCCTGTGTCATTAATCGGTCCAGTAACAATAATTCTGGGCATTACACTTTTCTTGACGCAAGCTGACCATCTAGTCCCTTCAGATGGAATTATTACCAGAGGCGAAATTACTGGTGAAAATAATTCTACACAAAATATTTCCAGTATTTTCTGGCAATTTTGCTATGAACTTCAAGATCTCCAGTACGTTAATACCACCCCGGTTATAATACTGGAGATTTCCTATAGCATCTGCAAAACGTCACTCAACAATCCGTACCAAATGTGGCCTTTCTCCATGCTGGTGCTGGAGGGGGTCTGCATGTGGCTCGGGCTCGTCGCATGCACGTATTACGTGTGGAAAATAAAAGTGCAGAGAATTGAACGCACGTCTCAGCTTTTCGTACGCCGCCTGTATGAATCAGCCTTCATTGACCTCTCTATGCTGCTGAACACGAAAATGAAAGTCATTCGTATGGCAAACAAGGAGAGTAGTGACATTGAAGTGGAAAACTGTGTCATTTACCTTTGTGCAACAATGTGGCATGAAACATATGACGAGATGCTGAAAATCTTGACTTCAATGTTCAGATTGGACAGATACCGAGGGGATCCAAAGGAGGAACACAAGGATGTCTTTGACTTTGAGTGCCATATTTATGTCGACGATGCCTTCATGATAGAAAAAGACGAAGAAAAAGGCACTGAGACAAGGCTTGTCAACAGCTATGTTAGCGACCTTGTAAATGTTGTCATGGAGGTGTACAGGGTATTTACAAATAAGGAGCCCGATGAGGTTTCTATCATTGAAACACCATATGGTGGTCGTCTTGTGTTTGTCATGCCAGAGGGAAACATGCTTTATGTCCACCTGAAGGACAAAGCACTGATTCGAAATAAAAAGAGATGGTCACAGATCATGTACCTGTATTACCTGCTTGGTTGGAAAGGATACAATGTCAAAAACCCTCAGAAAATAACAAGACAGAACAACCCATGCCGTGCCAGTCTCATATCATTAGATAGTGAGACTTATTTACTACCTTCTCATGACAACGACAGCAAGAGGAAGCATATATCTGATGACAACACGTATATCATGGCCTTGGATGGAGACACAGACTTCCAGCCTGGTGCTCTGATACTGCTCGTCGACCGTCTGAGAATGTATGACAACGTGGGTGCAGCCTGTGGACGGATCCACCCCACTGGAATGGGCCCAATGGTGTGGTATCAGAAGTTCGAGTACGCAGTGGGTCACTGGCTTCAGAAGACGGCGGAGCACGTGTTTGGGTCGGTTCTGTGCAGTCCAGGCTGTTTCAGTCTGTTCAGAGGATCTGCGCTGATGGACGACAACGTCCTGAAACGTTACACCACCAAAGCCACTCGAGCCTCTGAGTATGTGCAGTACGATCAAGGTGAGGACCGTTGGCTGTGCACTCTTCTCCTGCAGCAGGGCTGGCGGGTGGAGTATAACGCCGCCTCAGATGCTTACACCAACTCTCCTCAAGAGTTCAAAGAGTTTTACAACCAGAGACGTCGATGGGGTCCTTCGACACTGGCCAACACTCTCGATCTGCTCCACAGCGGGAGAGACACAGTCAAGAGGAACACCTCCATATCCATGCTTTACATCTTATATCAGATCTTCACCGTGGCTTCCTCCATTCTGGGACCTGCATCGGTTACCCTCATGGTTGCAGGTGACATGGTTATACAACAAACATTCATAACTCCTACTGGACTCTTCCTGGTGTCTGGTGCGATCCTGTACATGGTGACAGCCATCCTTCACCCTCAAGAGACCACACTGATCCTCTATGGTCTGATGTACTTCATCTGCATTCCCAGTGGCTATCTCCTCCTCACCATATACTCCCTAGTCAACATGCACATTGTATCTTGGGGCACTCGAGAAACCAGCAAGGGCAAGGAACAGAAAAAGCAAGTGGGTGTCGTGTGCAATCGCGACTGCAAAATGTGCTGTTGGGATGTGAAAATCCAAGTCACTCAAGAGACCGAAAATCTACTGCTTCAACAAATCCAGCACGCCGTCAATCCAAACACACCAGCTGCCAAAACCGAGCCCGACGTGCCGCTGGCTCAGAGCACCCAAGAAGAGCAGAGCAGTTTAGACATAAACAAACGCATCCTGGACAACCAGGAGATGAGCCATAAGAAGGGCGAATCCAAAGAGAATCTCAACAAGGACAACAAGGAAAAAGACACTGACTCTGAGAGAAGATATCTCCCTTTCCACGTGGTTCATGATCATCTTGTTAATTGGGTGGAGCCAGTGAAGAGAGAGTTCCTGAAGAAACTGACCTATGCAAATCTAAAGAGGAACCTTCAGGAGCAGATCAGATACACGCTGAGGAACAAGAACCAGGAGGATCTGTGCGAGGAACTGGTGCTGATTCTCACGGACACCCTGAACGAGGAGCTGAAGGATAAAGTGGGTCCTGAGGATGTGTTGACCGAGACTCAGCTGGAGGAACTGCAATATGCTCTGAATGAAGCCGCCAGACGCATCGTAAAGGCCAACCGCATCGAGAACGGAGCACAGAGACTGGAGCGTCGCGTCAAGAGGGGGATCGAGAGAACGCTTGTGGCTCCACAGGTTGAGAAACTATCTGAGGATGAAACCGATTTCTGGAATAAACTGTTAGAGCGTTATCTCAAGCCCATTCAAGATGACAAAGCTCATCTCGAGGAAGTGACACGGGAGCTAAAGTCTCTACGAAACAAGGCAGTGTTTTTGTACTTCATAGTTAACGTTCTATGGGTTGTAGCAACGTTCTTCCTTCAGGCCATTGGTGGTGATGTTCTGAGCATCGAGATCCCAAAGTATGATCCAGTAAACAAAACGTTATTACCAGAACCCATGAAGGTGGAGCCTTTGAGTTTGATGTTTCTGCTGTCTTTTGCCATTCTGCTCATCGTTCAGTTCTTGGCGATGCTCTACCACAGGGTATACACCCTCATCCATGTGGTGTCGTACAGAGGCACGGAGAAAAACTACAAAGAAAAGGACGAGGCGAGTAAACTCTCTTTTGAGGATGAAGATGATGCATTGGTCCTGGGGAATCCAATTGAAAATACTCTTATCATCACTGGCGACGACTTATAAACCAACAATGCTTTCATTTCTAGTTAGCAAAGTTACAGTCGAAGTGAATGAATGGTTTCTCATGCATGAAAAAGAAAACAACGAAGCCAGATTAACACCACATGCCCAAAATTGGAGCTAGGATTTGTTTACTGTAGATTTTTGCACTGAATAAGTCACATTTTTCTATGTATTCTTTGAATGTTTTACCTTTTGATCATTTGCATAGTTTATATCTGTGTTAATGTATTAGTTTGTGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45425 lncRNA upstream 16870 7366611 ~ 7366871 (+) True G40085
TU45423 lncRNA upstream 18190 7365270 ~ 7365551 (+) True G40083
TU45422 lncRNA upstream 18535 7364986 ~ 7365206 (+) True G40082
TU45421 lncRNA upstream 20816 7362513 ~ 7362925 (+) True G40081
TU45419 lncRNA upstream 56881 7326659 ~ 7326860 (+) True G40079
TU45446 lncRNA downstream 32423 7430106 ~ 7430335 (+) True G40101
TU45488 lncRNA downstream 209868 7607551 ~ 7607896 (+) True G40131
TU45492 lncRNA downstream 215242 7612925 ~ 7613174 (+) True G40135
TU45494 lncRNA downstream 217848 7615531 ~ 7615915 (+) True G40137
CI01000005_07368883_07371354.mRNA mRNA upstream 11687 7368883 ~ 7372054 (+) True CI01000005_07368883_07371354
CI01000005_07337613_07348597.mRNA mRNA upstream 35144 7337613 ~ 7348597 (+) True CI01000005_07337613_07348597
CI01000005_07330665_07337161.mRNA mRNA upstream 46580 7330665 ~ 7337161 (+) True CI01000005_07330665_07337161
CI01000005_07309292_07309954.mRNA mRNA upstream 73787 7309292 ~ 7309954 (+) True CI01000005_07309292_07309954
CI01000005_07297797_07302584.mRNA mRNA upstream 81065 7297797 ~ 7302676 (+) True CI01000005_07297797_07302584
CI01000005_07402067_07403893.mRNA mRNA downstream 4128 7401811 ~ 7403893 (+) True CI01000005_07402067_07403893
CI01000005_07447222_07447972.mRNA mRNA downstream 48317 7446000 ~ 7448298 (+) True CI01000005_07447222_07447972
CI01000005_07452398_07471837.mRNA mRNA downstream 54715 7452398 ~ 7472606 (+) True CI01000005_07452398_07471837
CI01000005_07474381_07477140.mRNA mRNA downstream 76698 7474381 ~ 7477688 (+) True CI01000005_07474381_07477140
CI01000005_07500131_07513279.mRNA mRNA downstream 99382 7497065 ~ 7513309 (+) True CI01000005_07500131_07513279
TU45244 other upstream 385401 6997544 ~ 6998340 (+) True G39930
TU43730 other upstream 2646884 4735346 ~ 4736857 (+) True CI01000005_04735429_04736817
TU42433 other upstream 3660238 3722744 ~ 3723503 (+) True G37392
TU41224 other upstream 5722709 1659733 ~ 1661032 (+) True G36291
TU41148 other upstream 5845937 1503143 ~ 1537804 (+) True G36223
TU45443 other downstream 200306 7597989 ~ 7598810 (+) True G40098

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012316 False 4652 mRNA 0.53 19 NC_007124.7 285874 ~ 303137 (-)