RNA id: TU45419


Basic Information

Item Value
RNA id TU45419
length 202
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G40079
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7326659 ~ 7326860 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACACTGTAGTGTCGATTCAAAGCACAAGACAAAGGAAGAAGTCCAAAGAAGCCTTTATTTAAATCCACCAACTGAAATACATGAATATGCATGAGAAAACAACTAAAAACGACTAATACCAGAACCAAGGGAGAACCAAGACTGAGGGCCCTATTATACACACAAAATGCCAAATATTACAAATAAAAGGATTCCTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45418 lncRNA upstream 2993 7323459 ~ 7323666 (+) True G40078
TU45294 lncRNA upstream 41735 7283843 ~ 7284924 (+) False G39962
TU45293 lncRNA upstream 41735 7284561 ~ 7284924 (+) True G39962
TU45388 lncRNA upstream 77914 7248413 ~ 7248745 (+) True G40048
TU45379 lncRNA upstream 87392 7239048 ~ 7239267 (+) True G40039
TU45421 lncRNA downstream 35653 7362513 ~ 7362925 (+) True G40081
TU45422 lncRNA downstream 38126 7364986 ~ 7365206 (+) True G40082
TU45423 lncRNA downstream 38410 7365270 ~ 7365551 (+) True G40083
TU45425 lncRNA downstream 39751 7366611 ~ 7366871 (+) True G40085
TU45446 lncRNA downstream 103246 7430106 ~ 7430335 (+) True G40101
CI01000005_07309292_07309954.mRNA mRNA upstream 16705 7309292 ~ 7309954 (+) True CI01000005_07309292_07309954
CI01000005_07297797_07302584.mRNA mRNA upstream 23983 7297797 ~ 7302676 (+) True CI01000005_07297797_07302584
CI01000005_07259213_07282404.mRNA mRNA upstream 43364 7259213 ~ 7283295 (+) True CI01000005_07259213_07282404
CI01000005_07179247_07180248.mRNA mRNA upstream 146093 7179194 ~ 7180566 (+) True CI01000005_07179247_07180248
CI01000005_07176040_07176850.mRNA mRNA upstream 149689 7175653 ~ 7176970 (+) True CI01000005_07176040_07176850
CI01000005_07330665_07337161.mRNA mRNA downstream 3805 7330665 ~ 7337161 (+) True CI01000005_07330665_07337161
CI01000005_07337613_07348597.mRNA mRNA downstream 10753 7337613 ~ 7348597 (+) True CI01000005_07337613_07348597
CI01000005_07368883_07371354.mRNA mRNA downstream 42023 7368883 ~ 7372054 (+) True CI01000005_07368883_07371354
CI01000005_07384171_07397440.mRNA mRNA downstream 56881 7383741 ~ 7397683 (+) True CI01000005_07384171_07397440
CI01000005_07402067_07403893.mRNA mRNA downstream 74951 7401811 ~ 7403893 (+) True CI01000005_07402067_07403893
TU45244 other upstream 328319 6997544 ~ 6998340 (+) True G39930
TU43730 other upstream 2589802 4735346 ~ 4736857 (+) True CI01000005_04735429_04736817
TU42433 other upstream 3603156 3722744 ~ 3723503 (+) True G37392
TU41224 other upstream 5665627 1659733 ~ 1661032 (+) True G36291
TU41148 other upstream 5788855 1503143 ~ 1537804 (+) True G36223
TU45443 other downstream 271129 7597989 ~ 7598810 (+) True G40098

Expression Profile