G39962


Basic Information

Item Value
gene id G39962
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7283843 ~ 7284924 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU45294
GCTGCACAGCAGCTCTTAAAAGAATAGTGTCAATGCAGGCAGATCAAAGCACTGTTGAATATCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAGCGGCAAGGAACCCAAACTCCATCAGGTGACAGACAAGTGGCAAATTGGTGTTAAAATGGAGAAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGGGCCAGTTCTCCTTTGTTACAATTCAGGTTGCTATCATAAGTCCAATAGGATTGCAACATTAAAAGTATTTATTCCAGTTCCATCCAATTGAGGATCGTATTGGAGGATCACGCCAGTATGGACGGTTTGTTGAGGAGCTGTGCCACTGGCTGTCGTGTCGATGAGGCCCTCACAGTGGATGATCTAGTTGACTCAATCTCTGCTGATACGTCAGGGCTGCGTTGTGGTCATGTCAAGGTGCAGGTCCTTGGTCTCACCTGGATACGGCCCGGATACGGTTGACTATGGTGAACCTCGGGATAAACAGAAAGACTAATATTAGCGTAGATGCCATTCTTCTTCTGATGTAACGAGTACATCAGGTGTTATAGGAAGTGTTCCCGGTTCCGGCTGACCTAATTTATGCAGCCTAATAATCCTTTAACGGATTTGAAAATATAAATTGGTAAATGTGTTATGTGTATGCCAGGTTAAAGAGATGCGTTTTTAGTCTAGATTTAAACTGACAGAGTGTGTCTGCTTCCTGAACAATGCTAGGAAGATTGTTCCAGAGTTTAGGTGCCAAATAGGAGAAGGATCTACCACCTGCGGTTGATTTTGATATTCTAGGTATTATCAGCTGGCCTGAATTCTGAGATCGCAATAGACGTGAAGGACTATAATGAATTAGGAGCTCGCTCAGGTACTGGGGAGCTAAACCATTTAGTGCTTTGTAAGTAATTAGCAAGATTTTAAAATCTATACGATGTTTAACAGGAAGCCAATGCAGTGTTGACAGAACTGGGCTAATATGGTCATACTTCCTGGTTCTAGTAAGAACTCTAGCTGCTGCATTTTGTACGAGCTGTAGTTTATTTATCAGGCGAGCAGAACAACCACCCAGTAGAGC
>TU45293
GAACAATGCTAGGAAGATTGTTCCAGAGTTTAGGTGCCAAATAGGAGAAGGATCTACCACCTGCGGTTGATTTTGATATTCTAGGTATTATCAGCTGGCCTGAATTCTGAGATCGCAATAGACGTGAAGGACTATAATGAATTAGGAGCTCGCTCAGGTACTGGGGAGCTAAACCATTTAGTGCTTTGTAAGTAATTAGCAAGATTTTAAAATCTATACGATGTTTAACAGGAAGCCAATGCAGTGTTGACAGAACTGGGCTAATATGGTCATACTTCCTGGTTCTAGTAAGAACTCTAGCTGCTGCATTTTGTACGAGCTGTAGTTTATTTATCAGGCGAGCAGAACAACCACCCAGTAGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45294 False 1082 lncRNA 0.43 1 7283843 7284924
TU45293 True 364 lncRNA 0.41 1 7284561 7284924

Neighbor

gene id symbol gene type direction distance location
CI01000005_07259213_07282404 CH1073-291C23.1, VIT coding upstream 548 7259213 ~ 7283295 (+)
CI01000005_07179247_07180248 NA coding upstream 103277 7179194 ~ 7180566 (+)
CI01000005_07176040_07176850 NA coding upstream 106873 7175653 ~ 7176970 (+)
CI01000005_07163500_07164501 NA coding upstream 119145 7163432 ~ 7164698 (+)
CI01000005_07159231_07159796 NA coding upstream 124038 7158678 ~ 7159805 (+)
CI01000005_07297797_07302584 NA coding downstream 12873 7297797 ~ 7302676 (+)
CI01000005_07309292_07309954 NA coding downstream 24368 7309292 ~ 7309954 (+)
CI01000005_07330665_07337161 NA coding downstream 45741 7330665 ~ 7337161 (+)
CI01000005_07337613_07348597 DDX21 coding downstream 52689 7337613 ~ 7348597 (+)
CI01000005_07368883_07371354 NA coding downstream 83959 7368883 ~ 7372054 (+)
G40048 NA non-coding upstream 35098 7248413 ~ 7248745 (+)
G40039 NA non-coding upstream 44576 7239048 ~ 7239267 (+)
G40035 NA non-coding upstream 49823 7233797 ~ 7234020 (+)
G40005 NA non-coding upstream 137947 7144875 ~ 7145896 (+)
G39943 NA non-coding upstream 256453 7025017 ~ 7027390 (+)
G40078 NA non-coding downstream 38535 7323459 ~ 7323666 (+)
G40079 NA non-coding downstream 41735 7326659 ~ 7326860 (+)
G40081 NA non-coding downstream 77589 7362513 ~ 7362925 (+)
G40082 NA non-coding downstream 80062 7364986 ~ 7365206 (+)
G40083 NA non-coding downstream 80346 7365270 ~ 7365551 (+)
G39930 NA other upstream 285503 6997544 ~ 6998340 (+)
CI01000005_04735429_04736817 COX20 other upstream 2546986 4735346 ~ 4737082 (+)
G37392 NA other upstream 3560340 3722744 ~ 3723503 (+)
G36291 NA other upstream 5622811 1659733 ~ 1661032 (+)
G36223 NA other upstream 5746039 1503143 ~ 1537804 (+)
CI01000005_07600541_07600974 NA other downstream 313065 7600541 ~ 7602964 (+)

Expression


Co-expression Network