CI01000005_07176040_07176850


Basic Information

Item Value
gene id CI01000005_07176040_07176850
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7175653 ~ 7176970 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_07176040_07176850.mRNA
GCTTAAAAATGCCAAAAGAAGAAACAGGAACAAGAGACAAAAAATAGAGAGTATGCAATTTATTGAAAACTGCATTTAAACTCAAACAGGCTGTTCATCAGCTGATCAAAAGACCATAGCCCAAAAAAAACCCACAGCAGAACTAAAAGTGTCAAAAAAGGACTCAATATTGAGTAGCCCCACTGTTCTTCTTGATCACCTCAAACACTCGTTTCGGCATGCTTGATGTGACTGTTTCCAGGAGGCTGGTGGGAACGTTGCTCCATGTGGTGAAGATGGCTTCACGAAGGGCATCCACGGTCTGGAACTGACGTTCGTTTTGTAAACTTCCCTTGCCATCCATCTGCAAACATTCTCAATGGGATTTAGATCAGGGGAACACGCAGGATGGTCCAAAAGAGCTCTGGGAGAAGTCCTTCGTCAGGTGGGCATTGTGAACTGCAGCGTTGTTCTGTTGAAAGACCCAGTCATTACCGCACAGACGAGGGCCATCAGTCAAGAGGGATGCCCGCTGCAACATGTCCACATAGCCAGCCGCCGTTTGACGCCCCTGCACAACCTGAAGCTCCATTTTCCATTGAAGGAAAAAGCACCCCAGATCATGATGAAGCCTCCTCCACTTTGCCGTATAGAAAACATCTCCAGTGGGATCTCCTTGTTATGCCATTAGTGTTGGAAGCCACCAGGACCGTCCAGAAGCTGTCTTATGGTTATTGGGCTGCAGTCAGCATCAGTAAGGGCCTTAATTTGGGGCAAGGATCCACCTGTGTCTTCATGGAGCGCTCGTCGGATCCTCCAACTCAGTGCAGTGATGGCGCATTGCGAGAGCCCTTGCTTGTGCAGCTCAACAATCCTGCCACGTTTAAAGACAGAAGGCCTTTTTGCCTTTGCCATCAGGAGATCAAGACAGTGTGAAGTCTGAAGAAGAATGACATGAAAGCCCTATTTTTGCGCAGATTTTAACTTTTTAAGGCTATGGTCTTAAACGTTTGATCAGCTGATGAACAGCTTGTTTGAGTTTAAATGCCGTTTTCA

Function

NR:

description
Transposable element Tc3 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_07176040_07176850.mRNA True 1035 mRNA 0.47 3 7175653 7176970

Neighbor

gene id symbol gene type direction distance location
CI01000005_07163500_07164501 NA coding upstream 10955 7163432 ~ 7164698 (+)
CI01000005_07159231_07159796 NA coding upstream 15848 7158678 ~ 7159805 (+)
CI01000005_07130117_07133993 NA coding upstream 41614 7128835 ~ 7134039 (+)
CI01000005_06988616_06989546 HEATR5B coding upstream 186107 6988616 ~ 6989546 (+)
CI01000005_06965750_06987383 HEATR5B coding upstream 188034 6965750 ~ 6987619 (+)
CI01000005_07179247_07180248 NA coding downstream 2224 7179194 ~ 7180566 (+)
CI01000005_07259213_07282404 CH1073-291C23.1, VIT coding downstream 82243 7259213 ~ 7283295 (+)
CI01000005_07297797_07302584 NA coding downstream 120827 7297797 ~ 7302676 (+)
CI01000005_07309292_07309954 NA coding downstream 132322 7309292 ~ 7309954 (+)
CI01000005_07330665_07337161 NA coding downstream 153695 7330665 ~ 7337161 (+)
G40005 NA non-coding upstream 29757 7144875 ~ 7145896 (+)
G39943 NA non-coding upstream 148263 7025017 ~ 7027390 (+)
G39906 NA non-coding upstream 236899 6938523 ~ 6938754 (+)
G39865 NA non-coding upstream 414570 6760778 ~ 6761083 (+)
G39864 NA non-coding upstream 421611 6753809 ~ 6754042 (+)
G40035 NA non-coding downstream 56827 7233797 ~ 7234020 (+)
G40039 NA non-coding downstream 62078 7239048 ~ 7239267 (+)
G40048 NA non-coding downstream 71443 7248413 ~ 7248745 (+)
G39962 NA non-coding downstream 106873 7283843 ~ 7284924 (+)
G40078 NA non-coding downstream 146489 7323459 ~ 7323666 (+)
G39930 NA other upstream 177313 6997544 ~ 6998340 (+)
CI01000005_04735429_04736817 COX20 other upstream 2438796 4735346 ~ 4737082 (+)
G37392 NA other upstream 3452150 3722744 ~ 3723503 (+)
G36291 NA other upstream 5514621 1659733 ~ 1661032 (+)
G36223 NA other upstream 5637849 1503143 ~ 1537804 (+)
CI01000005_07600541_07600974 NA other downstream 421019 7600541 ~ 7602964 (+)

Expression


Co-expression Network