RNA id: TU51420


Basic Information

Item Value
RNA id TU51420
length 423
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G45244
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7819113 ~ 7819734 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTCATTAATTACTCACCCTCGTGCCGTTTTACACCCGTAAGACCTTTGTTGATCTTCGGAACACAAATTAAGATATTTTTGTTTAAATCTGATGGCTCCGTGAGGCCTACATAGGGAGCAATGACATTTCCTCTCTAAAGATCCATAAAGGTACTAAAATCATATTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGCGACGAGAATATTTTTGGTGCGCCAAAAAAAACAAAATAACTTATTTAGTGATGGCTGATTTCAAAACACTGCTTCAGGAAGATTCGGAGCGTTATGAATCAGCGTGTCGAATCATGATTCGGATCACGTGTCAAACCGCCAAACTGCTGAAATCACATGACTTTGGCGCTCCGAACTGCGGATTCGACACGCTGATTCATTATGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51374 lncRNA upstream 70154 7742551 ~ 7748959 (+) True G45201
TU51371 lncRNA upstream 75653 7734809 ~ 7743460 (+) False G45201
TU51373 lncRNA upstream 75653 7734809 ~ 7743460 (+) False G45201
TU51406 lncRNA upstream 132937 7685958 ~ 7686176 (+) True G45233
TU51340 lncRNA upstream 135442 7648065 ~ 7683671 (+) True G45178
TU51425 lncRNA downstream 11428 7831162 ~ 7831407 (+) True G45249
TU51444 lncRNA downstream 65918 7885652 ~ 7887115 (+) False G45265
TU51447 lncRNA downstream 99301 7919035 ~ 7920355 (+) True G45265
TU51491 lncRNA downstream 126523 7946257 ~ 7946975 (+) True G45297
TU51497 lncRNA downstream 135312 7955046 ~ 7955249 (+) True G45303
CI01000006_07757777_07795187.mRNA mRNA upstream 23855 7757526 ~ 7795258 (+) True CI01000006_07757777_07795187
CI01000006_07699736_07726659.mRNA mRNA upstream 92116 7699736 ~ 7726997 (+) True CI01000006_07699736_07726659
CI01000006_07694812_07698078.mRNA mRNA upstream 120679 7694812 ~ 7698434 (+) True CI01000006_07694812_07698078
CI01000006_07692311_07693192.mRNA mRNA upstream 124996 7692240 ~ 7694117 (+) True CI01000006_07692311_07693192
CI01000006_07577082_07582303.mRNA mRNA upstream 236800 7576398 ~ 7582313 (+) True CI01000006_07577082_07582303
CI01000006_07939608_07940846.mRNA mRNA downstream 119584 7939318 ~ 7941415 (+) True CI01000006_07939608_07940846
CI01000006_08025159_08032131.mRNA mRNA downstream 205425 8025159 ~ 8032623 (+) True CI01000006_08025159_08032131
CI01000006_08108713_08122179.mRNA mRNA downstream 288829 8108563 ~ 8122364 (+) True CI01000006_08108713_08122179
CI01000006_08184916_08188512.mRNA mRNA downstream 365065 8184799 ~ 8189299 (+) True CI01000006_08184916_08188512
CI01000006_08198328_08199463.mRNA mRNA downstream 378463 8198197 ~ 8199666 (+) False CI01000006_08198328_08199463
TU51341 other upstream 135442 7621991 ~ 7683671 (+) False G45178
TU51004 other upstream 431229 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 648579 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1690438 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1709525 6108484 ~ 6108637 (+) True G43869
TU51448 other downstream 64133 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 199608 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 339782 8159516 ~ 8159528 (+) False G45351
TU51555 other downstream 378147 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU51552 other downstream 379110 8198844 ~ 8198909 (+) False G45351

Expression Profile