RNA id: TU62514


Basic Information

Item Value
RNA id TU62514
length 238
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G54946
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7201690 ~ 7201927 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGAAAAAAATTACGGAAGCATGTGAAATTGCGTCATAACGTAATTTTCGTCACGCAGTTAGATGATCTTAATGTCCATGCTGATTATATCAGAGATGGCAGAGAGAATTATTCATTCCAGTGTCTGTTTTGCTTTAAAACACGAACTCTCTGTCATATTCTGTCATTGTATCTGAAGAGCGTGAGCCCTCCCGCATCGCGCTGTTCCTGTCTGAATGGAATGTCGAAACATCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62332 lncRNA upstream 44532 7156881 ~ 7157158 (+) True G54779
TU62305 lncRNA upstream 80911 7120495 ~ 7120779 (+) True G54752
TU62180 lncRNA upstream 86247 7110351 ~ 7115443 (+) True CI01000009_07111833_07115320
TU62178 lncRNA upstream 91049 7070751 ~ 7110641 (+) True G54632
TU62246 lncRNA upstream 243762 6957719 ~ 6957928 (+) True G54694
TU62520 lncRNA downstream 9475 7211402 ~ 7211650 (+) True G54952
TU62528 lncRNA downstream 23214 7225141 ~ 7227087 (+) True G54958
TU62525 lncRNA downstream 25524 7227451 ~ 7228376 (+) False G54957
TU62526 lncRNA downstream 25857 7227784 ~ 7228445 (+) False G54957
TU62527 lncRNA downstream 26175 7228102 ~ 7228576 (+) True G54957
CI01000009_07111833_07115320.mRNA mRNA upstream 86268 7111722 ~ 7115422 (+) False CI01000009_07111833_07115320
CI01000009_07101768_07105835.mRNA mRNA upstream 95681 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
CI01000009_07091022_07092696.mRNA mRNA upstream 108889 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07051811_07054331.mRNA mRNA upstream 147065 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_06975071_07009147.mRNA mRNA upstream 192273 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07316335_07346664.mRNA mRNA downstream 114408 7316335 ~ 7346664 (+) True CI01000009_07316335_07346664
CI01000009_07361747_07377615.mRNA mRNA downstream 159820 7361747 ~ 7378451 (+) True CI01000009_07361747_07377615
CI01000009_07392574_07395739.mRNA mRNA downstream 190554 7392481 ~ 7395770 (+) True CI01000009_07392574_07395739
CI01000009_07440170_07459782.mRNA mRNA downstream 238112 7440039 ~ 7460409 (+) True CI01000009_07440170_07459782
CI01000009_07490344_07493862.mRNA mRNA downstream 288321 7490248 ~ 7493862 (+) True CI01000009_07490344_07493862
TU61103 other upstream 953298 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 1268889 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1662636 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1662636 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 3993766 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 1927373 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2651432 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4558859 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4732015 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4732015 11933942 ~ 11935251 (+) False G57811

Expression Profile