RNA id: TU62520


Basic Information

Item Value
RNA id TU62520
length 249
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G54952
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7211402 ~ 7211650 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAATATACTTGCGGTGGTGATCGGGTGAAAAATCCTCCTATTACCCACGGCACAGAAATGATCTACTGCATGTGACAAACAAATAATTTGTGATTTTTAACAGTATTTTTATTTATTGAAATTAATTTTAATTACATAGCATACTGTTACATTTAATTACATACTAATATTATGTATTATTATGCATTGTAAATTATGCAAAATTACAGCATTTAAATGGTTCTCCTTTTCATATGTTCTCCTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62514 lncRNA upstream 9475 7201690 ~ 7201927 (+) True G54946
TU62332 lncRNA upstream 54244 7156881 ~ 7157158 (+) True G54779
TU62305 lncRNA upstream 90623 7120495 ~ 7120779 (+) True G54752
TU62180 lncRNA upstream 95959 7110351 ~ 7115443 (+) True CI01000009_07111833_07115320
TU62178 lncRNA upstream 100761 7070751 ~ 7110641 (+) True G54632
TU62528 lncRNA downstream 13491 7225141 ~ 7227087 (+) True G54958
TU62525 lncRNA downstream 15801 7227451 ~ 7228376 (+) False G54957
TU62526 lncRNA downstream 16134 7227784 ~ 7228445 (+) False G54957
TU62527 lncRNA downstream 16452 7228102 ~ 7228576 (+) True G54957
TU62534 lncRNA downstream 25657 7237307 ~ 7237514 (+) True G54964
CI01000009_07111833_07115320.mRNA mRNA upstream 95980 7111722 ~ 7115422 (+) False CI01000009_07111833_07115320
CI01000009_07101768_07105835.mRNA mRNA upstream 105393 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
CI01000009_07091022_07092696.mRNA mRNA upstream 118601 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07051811_07054331.mRNA mRNA upstream 156777 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_06975071_07009147.mRNA mRNA upstream 201985 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07316335_07346664.mRNA mRNA downstream 104685 7316335 ~ 7346664 (+) True CI01000009_07316335_07346664
CI01000009_07361747_07377615.mRNA mRNA downstream 150097 7361747 ~ 7378451 (+) True CI01000009_07361747_07377615
CI01000009_07392574_07395739.mRNA mRNA downstream 180831 7392481 ~ 7395770 (+) True CI01000009_07392574_07395739
CI01000009_07440170_07459782.mRNA mRNA downstream 228389 7440039 ~ 7460409 (+) True CI01000009_07440170_07459782
CI01000009_07490344_07493862.mRNA mRNA downstream 278598 7490248 ~ 7493862 (+) True CI01000009_07490344_07493862
TU61103 other upstream 963010 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 1278601 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1672348 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1672348 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 4003478 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 1917650 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2641709 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4549136 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4722292 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4722292 11933942 ~ 11935251 (+) False G57811

Expression Profile