RNA id: TU62527


Basic Information

Item Value
RNA id TU62527
length 475
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G54957
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7227451 ~ 7228576 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCGGAGATCTGGCTCTTTGATCGACACTCCTTTCCTCTTCCGTAGTTTAAATGTGGAAATATATTTACTGGTGGCTCCCCCACATCCGATCGTCGTGCACCATCTGGGCAGGGTGCTAAAAGATGCTCGCTGCCAAAATGTGCTCTCTGAGCTCATGAAACTGTCCCCGCTTCTTGTCACACTGCATATCAAGAATACCTGGAAGGAATGACATACAATTGAATTATTAGGAAAAACTGTAAAATGTTATAATAATATTAGACAGGGCACTGAGAAGCATATTATTTTTTAGAAATAAAAGACTTGAATGACTTGCTTTAGTGACTCATTTCATAGATAATTAACTGTTGTGCAAGCAAGCAAATGAATAAATAATTAAATTAAACGCATTACACTATTTCATGTAACAAAGAATGTATTTTTTTCCCATGTACAATACATTTCTTCAGTAGATCCACTATTACAAACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62528 lncRNA upstream 1015 7225141 ~ 7227087 (+) True G54958
TU62520 lncRNA upstream 16452 7211402 ~ 7211650 (+) True G54952
TU62514 lncRNA upstream 26175 7201690 ~ 7201927 (+) True G54946
TU62332 lncRNA upstream 70944 7156881 ~ 7157158 (+) True G54779
TU62305 lncRNA upstream 107323 7120495 ~ 7120779 (+) True G54752
TU62534 lncRNA downstream 8731 7237307 ~ 7237514 (+) True G54964
TU62566 lncRNA downstream 61020 7289596 ~ 7289853 (+) True G54992
TU62573 lncRNA downstream 67447 7296023 ~ 7296275 (+) True G54999
TU62587 lncRNA downstream 175499 7404075 ~ 7404335 (+) True G55013
TU62583 lncRNA downstream 235552 7464128 ~ 7464458 (+) True G55009
CI01000009_07111833_07115320.mRNA mRNA upstream 112680 7111722 ~ 7115422 (+) False CI01000009_07111833_07115320
CI01000009_07101768_07105835.mRNA mRNA upstream 122093 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
CI01000009_07091022_07092696.mRNA mRNA upstream 135301 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07051811_07054331.mRNA mRNA upstream 173477 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_06975071_07009147.mRNA mRNA upstream 218685 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07316335_07346664.mRNA mRNA downstream 87759 7316335 ~ 7346664 (+) True CI01000009_07316335_07346664
CI01000009_07361747_07377615.mRNA mRNA downstream 133171 7361747 ~ 7378451 (+) True CI01000009_07361747_07377615
CI01000009_07392574_07395739.mRNA mRNA downstream 163905 7392481 ~ 7395770 (+) True CI01000009_07392574_07395739
CI01000009_07440170_07459782.mRNA mRNA downstream 211463 7440039 ~ 7460409 (+) True CI01000009_07440170_07459782
CI01000009_07490344_07493862.mRNA mRNA downstream 261672 7490248 ~ 7493862 (+) True CI01000009_07490344_07493862
TU61103 other upstream 979710 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 1295301 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1689048 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1689048 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 4020178 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 1900724 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2624783 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4532210 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4705366 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4705366 11933942 ~ 11935251 (+) False G57811

Expression Profile