RNA id: TU62573


Basic Information

Item Value
RNA id TU62573
length 253
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G54999
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7296023 ~ 7296275 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACTATCGAGATAAAGTGTTACCATAGCGTTTATCCCTGTTAATGTGCATACATTGAGTCATCTGCCTTACACTTTTCAGGTGATTTGGAGGCATTGCTCTGCTTGGAATTAGTTCCTTTTAGCATTAATAACAATATTTTAGATACATTTTATGGTGGGATCTATGCATAGAGAAAACACACTTCTGTAATTGGACATTTGACCTTAGGCTATAGTTATTAAGATATAAAACTGGTGACAACTTCCCCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62566 lncRNA upstream 6170 7289596 ~ 7289853 (+) True G54992
TU62534 lncRNA upstream 58509 7237307 ~ 7237514 (+) True G54964
TU62527 lncRNA upstream 67447 7228102 ~ 7228576 (+) True G54957
TU62526 lncRNA upstream 67578 7227784 ~ 7228445 (+) False G54957
TU62525 lncRNA upstream 67647 7227451 ~ 7228376 (+) False G54957
TU62587 lncRNA downstream 107800 7404075 ~ 7404335 (+) True G55013
TU62583 lncRNA downstream 167853 7464128 ~ 7464458 (+) True G55009
TU62604 lncRNA downstream 187943 7484218 ~ 7484503 (+) True G55030
TU62606 lncRNA downstream 190538 7486813 ~ 7487030 (+) True G55032
TU62631 lncRNA downstream 255597 7551872 ~ 7552121 (+) True G55057
CI01000009_07111833_07115320.mRNA mRNA upstream 180601 7111722 ~ 7115422 (+) False CI01000009_07111833_07115320
CI01000009_07101768_07105835.mRNA mRNA upstream 190014 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
CI01000009_07091022_07092696.mRNA mRNA upstream 203222 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07051811_07054331.mRNA mRNA upstream 241398 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_06975071_07009147.mRNA mRNA upstream 286606 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07316335_07346664.mRNA mRNA downstream 20060 7316335 ~ 7346664 (+) True CI01000009_07316335_07346664
CI01000009_07361747_07377615.mRNA mRNA downstream 65472 7361747 ~ 7378451 (+) True CI01000009_07361747_07377615
CI01000009_07392574_07395739.mRNA mRNA downstream 96206 7392481 ~ 7395770 (+) True CI01000009_07392574_07395739
CI01000009_07440170_07459782.mRNA mRNA downstream 143764 7440039 ~ 7460409 (+) True CI01000009_07440170_07459782
CI01000009_07490344_07493862.mRNA mRNA downstream 193973 7490248 ~ 7493862 (+) True CI01000009_07490344_07493862
TU61103 other upstream 1047631 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 1363222 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1756969 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1756969 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 4088099 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 1833025 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2557084 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4464511 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4637667 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4637667 11933942 ~ 11935251 (+) False G57811

Expression Profile