RNA id: TU62606


Basic Information

Item Value
RNA id TU62606
length 218
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G55032
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7486813 ~ 7487030 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACAGAAAAAAACAATAATATTGTGAAATATTATTACAATTTAAAATTATGGTTCTCTATTTTAATATACTTTAAAATATAATTTATTTCTGTGATGCAAAGCTGAATTGTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTATTATCAATGTTGGAAACAGTTGTGCTGCTTAATATTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62604 lncRNA upstream 2310 7484218 ~ 7484503 (+) True G55030
TU62583 lncRNA upstream 22355 7464128 ~ 7464458 (+) True G55009
TU62587 lncRNA upstream 82478 7404075 ~ 7404335 (+) True G55013
TU62573 lncRNA upstream 190538 7296023 ~ 7296275 (+) True G54999
TU62566 lncRNA upstream 196960 7289596 ~ 7289853 (+) True G54992
TU62631 lncRNA downstream 64842 7551872 ~ 7552121 (+) True G55057
TU62633 lncRNA downstream 74519 7561549 ~ 7561817 (+) True G55058
TU62666 lncRNA downstream 165889 7652919 ~ 7653350 (+) True G55091
TU62941 lncRNA downstream 237546 7724576 ~ 7724812 (+) True G55328
TU62998 lncRNA downstream 277163 7764193 ~ 7764434 (+) True G55385
CI01000009_07440170_07459782.mRNA mRNA upstream 26404 7440039 ~ 7460409 (+) True CI01000009_07440170_07459782
CI01000009_07392574_07395739.mRNA mRNA upstream 91043 7392481 ~ 7395770 (+) True CI01000009_07392574_07395739
CI01000009_07361747_07377615.mRNA mRNA upstream 108362 7361747 ~ 7378451 (+) True CI01000009_07361747_07377615
CI01000009_07316335_07346664.mRNA mRNA upstream 140149 7316335 ~ 7346664 (+) True CI01000009_07316335_07346664
CI01000009_07111833_07115320.mRNA mRNA upstream 371391 7111722 ~ 7115422 (+) False CI01000009_07111833_07115320
CI01000009_07490344_07493862.mRNA mRNA downstream 3218 7490248 ~ 7493862 (+) True CI01000009_07490344_07493862
CI01000009_07543034_07544161.mRNA mRNA downstream 56004 7543034 ~ 7544161 (+) True CI01000009_07543034_07544161
CI01000009_07545007_07550103.mRNA mRNA downstream 57977 7545007 ~ 7550729 (+) True CI01000009_07545007_07550103
CI01000009_07555667_07623149.mRNA mRNA downstream 68637 7555667 ~ 7623918 (+) True CI01000009_07555667_07623149
CI01000009_07969738_07973990.mRNA mRNA downstream 482114 7969144 ~ 7974033 (+) True CI01000009_07969738_07973990
TU61103 other upstream 1238421 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 1554012 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1947759 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1947759 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 4278889 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 1642270 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2366329 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4273756 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4446912 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4446912 11933942 ~ 11935251 (+) False G57811

Expression Profile