RNA id: TU62587


Basic Information

Item Value
RNA id TU62587
length 261
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G55013
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7404075 ~ 7404335 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTATTTTTACATTTCTTTGTCCGTAGGGTAATGAGGAGGGCGTGGTTTACCTCAGACATAGCAATCGAGCTCAGAGTAGGCGAGAGCGAAGCGTTGATGCCACAGTGACACCTTGTGGTGTGCCCGAAATAGTGTAGCCTACTGACGTTGATACTGGGATGAATGATTTGGATGGGTAGTATGGCCAAAATCTTATATTACGGGTTAAGTAATATCACCCTAACTGTACTGTGTGACATGGATAGGCTACTCTTTATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62573 lncRNA upstream 107800 7296023 ~ 7296275 (+) True G54999
TU62566 lncRNA upstream 114222 7289596 ~ 7289853 (+) True G54992
TU62534 lncRNA upstream 166561 7237307 ~ 7237514 (+) True G54964
TU62527 lncRNA upstream 175499 7228102 ~ 7228576 (+) True G54957
TU62526 lncRNA upstream 175630 7227784 ~ 7228445 (+) False G54957
TU62583 lncRNA downstream 59793 7464128 ~ 7464458 (+) True G55009
TU62604 lncRNA downstream 79883 7484218 ~ 7484503 (+) True G55030
TU62606 lncRNA downstream 82478 7486813 ~ 7487030 (+) True G55032
TU62631 lncRNA downstream 147537 7551872 ~ 7552121 (+) True G55057
TU62633 lncRNA downstream 157214 7561549 ~ 7561817 (+) True G55058
CI01000009_07392574_07395739.mRNA mRNA upstream 8305 7392481 ~ 7395770 (+) True CI01000009_07392574_07395739
CI01000009_07361747_07377615.mRNA mRNA upstream 25624 7361747 ~ 7378451 (+) True CI01000009_07361747_07377615
CI01000009_07316335_07346664.mRNA mRNA upstream 57411 7316335 ~ 7346664 (+) True CI01000009_07316335_07346664
CI01000009_07111833_07115320.mRNA mRNA upstream 288653 7111722 ~ 7115422 (+) False CI01000009_07111833_07115320
CI01000009_07101768_07105835.mRNA mRNA upstream 298066 7101269 ~ 7106009 (+) True CI01000009_07101768_07105835
CI01000009_07440170_07459782.mRNA mRNA downstream 35704 7440039 ~ 7460409 (+) True CI01000009_07440170_07459782
CI01000009_07490344_07493862.mRNA mRNA downstream 85913 7490248 ~ 7493862 (+) True CI01000009_07490344_07493862
CI01000009_07543034_07544161.mRNA mRNA downstream 138699 7543034 ~ 7544161 (+) True CI01000009_07543034_07544161
CI01000009_07545007_07550103.mRNA mRNA downstream 140672 7545007 ~ 7550729 (+) True CI01000009_07545007_07550103
CI01000009_07555667_07623149.mRNA mRNA downstream 151332 7555667 ~ 7623918 (+) True CI01000009_07555667_07623149
TU61103 other upstream 1155683 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 1471274 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1865021 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1865021 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 4196151 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 1724965 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2449024 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4356451 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4529607 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4529607 11933942 ~ 11935251 (+) False G57811

Expression Profile