RNA id: TU67878


Basic Information

Item Value
RNA id TU67878
length 419
lncRNA type intronic
GC content 0.40
exon number 2
gene id G59610
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14176003 ~ 14176444 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGTGGAACGACATGAGGGCGAGTACTTAAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAAACTTTGTCGGCTGAAGACCCAAGTTTGGTTTGAAGACGAAAAACGTTCCAAGCACAATGTTCTCCACCATTCTTGATTTTCGTGGTCTTGCGGCTATCAGAGCAGAAACGAAAGCTGCTGCTCTCTATGTTTTTCTTCGCCATATCTCCGGTCGCATTTATATGTAAATTGCACAAGCTTATTTTGTCCATTACATTGAAAGATCTGAAAAAAAAAAAAAACATTTACCCACACATAGACCCTCCCCTTGAAGAAATCAGGACAGAAGTCGTTGAAAGTAGGGTTGTCAAAAGTACTGACTTTGGTACCAAGTCGGTACTGAAATTTGAAAAATGAGACGATAGCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67810 lncRNA downstream 100170 14075624 ~ 14075833 (-) True G59552
TU67749 lncRNA downstream 136110 14039324 ~ 14039893 (-) True G59491
TU67746 lncRNA downstream 235375 13939445 ~ 13940628 (-) True G59488
TU67747 lncRNA downstream 244322 13883972 ~ 13931681 (-) True G59489
TU67727 lncRNA downstream 311400 13826486 ~ 13864603 (-) True G59470
TU67894 lncRNA upstream 11941 14188385 ~ 14189163 (-) True G59626
TU67904 lncRNA upstream 23467 14199911 ~ 14201000 (-) True G59636
TU67860 lncRNA upstream 306378 14482822 ~ 14487015 (-) True CI01000009_14476688_14573629
TU67858 lncRNA upstream 437654 14614098 ~ 14711193 (-) True G59590
TU67851 lncRNA upstream 506425 14682869 ~ 14684152 (-) True G59583
CI01000009_14052206_14053489.mRNA mRNA downstream 122050 14051969 ~ 14053953 (-) True CI01000009_14052206_14053489
CI01000009_14012800_14024940.mRNA mRNA downstream 150772 14011950 ~ 14025231 (-) True CI01000009_14012800_14024940
CI01000009_13990326_14004387.mRNA mRNA downstream 171177 13989732 ~ 14004826 (-) True CI01000009_13990326_14004387
CI01000009_13983271_13988001.mRNA mRNA downstream 187655 13983208 ~ 13988348 (-) True CI01000009_13983271_13988001
CI01000009_13975122_13976026.mRNA mRNA downstream 198879 13975099 ~ 13977124 (-) False CI01000009_13975122_13976026
CI01000009_14201347_14205288.mRNA mRNA upstream 24671 14201115 ~ 14205887 (-) True CI01000009_14201347_14205288
CI01000009_14248805_14255014.mRNA mRNA upstream 71199 14247643 ~ 14255775 (-) True CI01000009_14248805_14255014
CI01000009_14342067_14344332.mRNA mRNA upstream 165543 14341987 ~ 14344934 (-) True CI01000009_14342067_14344332
CI01000009_14476688_14573629.mRNA mRNA upstream 299280 14475724 ~ 14573629 (-) False CI01000009_14476688_14573629
CI01000009_14626182_14652953.mRNA mRNA upstream 449387 14625831 ~ 14653259 (-) True CI01000009_14626182_14652953
TU67748 other downstream 138130 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 197389 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67286 other downstream 1886485 12288217 ~ 12289518 (-) False G59097
TU67287 other downstream 1887026 12288217 ~ 12288977 (-) True G59097
TU64878 other downstream 5315440 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU68092 other upstream 685953 14862397 ~ 14887464 (-) True G59811
TU68236 other upstream 955660 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 1199816 15376260 ~ 15443047 (-) True G60362
TU68711 other upstream 1470331 15646775 ~ 15651888 (-) True G60359

Expression Profile