RNA id: TU71601


Basic Information

Item Value
RNA id TU71601
length 303
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G62868
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3963748 ~ 3964163 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGATGGAAAGAATCAAAGCTCCAAATGCAAGAGAGCCCGTGTGATACCTTAAAGCCCTGCCAAATGATGAAGCCAAGGGGCAAGGTGGGATGTCTTCTGGCTTCCTCAAGGCCCAGTAATATGAGGCAAAAGCCCCAGCGAGGGTGCACTGGCCCAGAGCGATGGTGAAATTCACCAGCCAGAGGAAGACAAGTAAATTGCAGAGCTGAAGTACAAAGATATAACGGTGGTACAAACTCTCCCCACCGTAAAAAGCAAACGTGCACTGGGAGCCCGGACACAGTTTAGTCACGTTTGATTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71507 lncRNA upstream 117307 3818656 ~ 3846441 (+) True G62788
TU71510 lncRNA upstream 147243 3816031 ~ 3816505 (+) True G62791
TU71468 lncRNA upstream 177494 3781633 ~ 3786254 (+) True CI01000010_03781620_03785840
TU71462 lncRNA upstream 205947 3757200 ~ 3757801 (+) True G62748
TU71441 lncRNA upstream 259547 3703989 ~ 3704201 (+) True G62738
TU71602 lncRNA downstream 490 3964653 ~ 3965140 (+) True G62869
TU71604 lncRNA downstream 2426 3966589 ~ 3969431 (+) False G62871
TU71607 lncRNA downstream 2426 3966589 ~ 3967416 (+) False G62871
TU71605 lncRNA downstream 5648 3969811 ~ 3981486 (+) True G62871
TU71636 lncRNA downstream 90432 4054595 ~ 4061190 (+) True G62893
CI01000010_03952874_03957173.mRNA mRNA upstream 6504 3952874 ~ 3957244 (+) True CI01000010_03952874_03957173
CI01000010_03920171_03935066.mRNA mRNA upstream 27889 3920171 ~ 3935859 (+) True CI01000010_03920171_03935066
CI01000010_03915860_03918633.mRNA mRNA upstream 44611 3915860 ~ 3919137 (+) True CI01000010_03915860_03918633
CI01000010_03902240_03911029.mRNA mRNA upstream 52293 3902106 ~ 3911455 (+) True CI01000010_03902240_03911029
CI01000010_03882122_03883663.mRNA mRNA upstream 79986 3882122 ~ 3883762 (+) True CI01000010_03882122_03883663
CI01000010_04010515_04020837.mRNA mRNA downstream 46352 4010515 ~ 4020898 (+) True CI01000010_04010515_04020837
CI01000010_04025764_04026729.mRNA mRNA downstream 61198 4025361 ~ 4027266 (+) True CI01000010_04025764_04026729
CI01000010_04046204_04137642.mRNA mRNA downstream 82041 4046204 ~ 4137642 (+) True CI01000010_04046204_04137642
CI01000010_04165584_04232583.mRNA mRNA downstream 201421 4165584 ~ 4232583 (+) True CI01000010_04165584_04232583
CI01000010_04368541_04374080.mRNA mRNA downstream 404308 4368471 ~ 4374174 (+) True CI01000010_04368541_04374080
TU71580 other upstream 23803 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 69955 3890095 ~ 3893793 (+) True G62838
TU70047 other upstream 632562 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 763840 3194155 ~ 3199031 (+) True G61462
TU69273 other upstream 3016204 946794 ~ 946871 (+) True G60842
TU71738 other downstream 484009 4448172 ~ 4449327 (+) True G62983
TU71841 other downstream 676678 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 676678 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU72215 other downstream 1731282 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 1733260 5697423 ~ 5699465 (+) False G63403

Expression Profile