RNA id: TCONS_00003172


Basic Information

Item Value
RNA id TCONS_00003172
length 4476
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_000695
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 53688977 ~ 53695555 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGCTACTTGCTCCAGTAACAAAGGCCTTCCCTTTACTCTTTTCTGGATTTCTCTCATCTCGTCCTGATACTCTTTCTGTCTCTGGAGATCTTGTTTCCTGTTTATaagcCTGAACTCTTTTAGCTTGTTAGGGGATGTCTGAGCCAGGGTTACATGTGGATCGATGGCCTGAGCTCGCTTTGTGACCAGCTTCTGCAGCCTCTTCTCTCTCTGTTTTTGCTTCTCCCTCCatttctcctcctcttcttctgcttTCTTTCTGTGCTCGAGAACTTTTCTACTCGTGTAGGGGTAAAAAGCTTTCAGAAGTGAATCTTTGCTGGAGAGATGCCACTAAAGGGATGGCACTATTGGGCAAGACTGCGAGAACAGGGTTGGAGAGCACTTGATGCTGCCTTCAAGTCACAATGATTGCatttacagcagtgtttctcaaccaagtTCCTGAAAGACCACTGGCTCTGCACATTTCCCATGTTGCCTTAAGCAAACACAccttcagatcatcagctcattcgCAGAGACTGAAAAATCTGTGATTGGTGTGAAAGacaaagaagacatccaaaacatgcagtgttggtgggcctacaggaacatggttgagaaacactgatatagAGGATAAGCAAAACTCAATGTTAGTGCTAACATTGACTCAATAATGATGAGTACCAACTGCAGTGCTATAGGCGAAGcaaattaaaggcatagttcacccaaaactgaacatccTGTCATTATTCATTTGTCATCCAAACCTGTAGATACAACTGAAGAACGTTAGAGAacttgacttccactgtattttttatttttatattgtcaaTATGGATATCAATggtgttcagctttcttcaaatgatactcctttgtgtttaacagaagaagacTAACAAAGGTTTGGTACtgcttgaggatgagtaaatcacGTCTTTCCAATCCCctaagacctttgttcatcttctgagtgcaaatcaagatattttagatgaaatcagagagctctcttgtcctccatagacagcaagggtccTGAGATTTTCAAAGTCCAGGAAAGGAGCAAAAGCTTTGTCGAAACATTTCATGTGACCTCAGTGGCTCAAGAACATTTTGTTTGGCTTTGTTCGCCAATGTCTTCCATGTCAGATTTGGGTGTGTGTTTACTATGAGCAATATGGTGCTTGCATGTTACACTGCTTATCCTAATGGCAGTATGTCATAATGGTCATAGTAAATGTGCGCAATGGTCTGTCACGGAATAAAAGACAAATataaacaaagttgtttttacagctttttggtgcacaaaagtgttcttggagcatTGTGTGATTAAACTTTGTTATGTTTTTGGTTGCTTCTCTGAACTTTGAAAGTCTCCATGGCTGTGTTTTGAGGTTgagagagctcctggatttcatctaaaatatattcatttgatTTCAGAAAATGAGCAAAGGTCTCAAGGGATTGGATTGACATGAGGGTCAGTAAGTAATaatggaattttcatttttgggtgagctaatcCCTTTGAAGTCGACATGAAACAGAATTTAAGATTATTCCTTTGTCCCAAGTACATCCATTTGAAGGTGAcgaggtggcgcagtaggtagtgctgtcggctcacagcaagaaggtcgctaaaaTAATCATAGACTGACGAATGAATGAAGGCAGAGGAGAAATGAGACATGccctgatagctccaccctaaatgattgatagctccaccctaaaggaattCTATGTGACCAGGGAGGTTGTGCCTTTTGATTAACGATTCTACAGACACATGAATTATTACTAAATAATGAAATGCACAGATACATCTTTATAACAATAGCTactatatacagctgaagtcagaattattagccctcgtttatttttttccccaatttctgtttaacggagagaaaaaaaatctaaacatttctaataataatagttttaataactcatctctaataactgatctattgtatctttgtcatgatgacagtaaataatatttgactagatattttcaagacacttctatacagcttaaagtgacatttaaaggcttaactaggttaattagggtaattaggcaggttagggtaattaggaaagttattgtataacgatggatgttctgtagattatccaataaaaaattgcttaaaggggctaataatattgtccctaaaatgtttttaaaaaaattaaaaactgctttcattcttgccgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtgaaaatttccttcctctgttaaacatcacttagaaaatatatatataaaaaaaaaaatttaaatcgaGAGGGGGggggtaattctgacttcaactgtacatatgaaAATAAGAAGAGTATATTTTGATTTGATGATTTGATTTGACTTTAATGATGATTCCTATGAGAACTTGAAGGCAGCAGGAGGATTCGGGAGCATCCATAAGTGAACACAACACAGCTCAGATTTTCCACACAGGATCAGAAGTCTTGTACTGCTAACGGAGTTACTAAGGGGAGCAGGGAATCATTTAGGGTTTAAAGGAGAGTTCGGTctcactgttacctcacagcttCTTGCCGTTTCTTAGCAGCATCAGTAATCTTAGCAGACAAACATTCCTGGCTTCCGGAAAGCGAGGAGCAAAGAGAAGATGAAGGCGTCCTGGGCGAAAGGACAGGCGTGTTCACAAATGGCCAGCGCGATGGTTTTGGGCTCTGTATTTCTGCTTGGATTTCCGCCATGATGCGTTCTTTGTGCGATGTGATGTTAGCTGTGCGCAGTTGGAATGGTTCGCATGATGTGACAGGCATCACCTCTTTACGTTTTGCCAGCTGCTTCCGAAACCTCCTGTAGCTGGCATCGAAATCTGGCACTTCAGCGTTGATTTTGGGCTGGTGTGTCTCTTCGGCATCTTTAACGATGAtcttttgagtttgtttttcgCTGAGCTGACGCGCAAGCATGCTAGGAGGCATGGATGCAGTGTGTAGCATCTCTCTCGCCCGCATCTGCATTTTAATTGCCCTGTAGAGTTCCTCCTCTTTCTGTCGCTCGCCCAACGTGGCTTCCTTCACCGCCTTTGGGACAGGTTTGGCTTTAAACGGGCACTTCCTCCTCTCCTCTTCCTCTTTGTTACGCTGAAGTGTTTGCTCGCGTAGCTTGGCGTCCTTCTGTTCTTTCTTCAACCGTTCGCGCTCCAGGAAGCGGAAGGGTTTCTGAGAGATGTGAAGACGCTGCTGTTCAAACTCCAGATGGAGTCTTCTTCGCTCTTCATTACGCTCCTGCAGATCTTCATACAACGGGAGGCGCACATGGGCAGGAATGGGACTGGCACGAAACTTCTTCTGGCACTCGCTGAGCTCTTCCAGCTGCCGTCGGAGATCCGCGTTCTCTTGCTCGATCTCAGATCGCGATTTTACACCCTTCTTGCGCCATTCTGCCTCTCGGACGGTCATCTGGAAAGGCTTCGGGACTGTCACTCTCGGATGCCAATCCTCATGATGCTTGTGTTTTTTCGCCCGCTGACTTCTAATCCTTTCTTTGGGTTTGCTAATACCCTGGCAGTCTGCTGGTAGACTATGCACTGAGGAGGACATGGGGTGCCGGTGAGGTGGAGAAAGCTTATTAACGCTAAAGTCCTGCCACATGTTTTTAATGTGTTCTTTCGGTGAGATAAGAAGGCCTTTCTCCGTGTTGCGATCTCCTTGGCCTTCTTCGTCAGACAAATCAGATGGATCTGAAGTCCGTCGTAACTCTAAAGCAGACTGGGCTTTTTTCAGACCGCTGGTTATCACTGGACTTCCTTGTGGGGATCTGTGAATTTAAcaattttcttttacttttaattccaaagtttaagggtgctttcacacctgccttatttagttagATTGAATCGGACTAGAGTTCGTTTTTCCTATTTAGTGCGGTTCGTTTaagcaggtgagaatgcagcaatcgtattcgagtgcgcaccaaaagcggaccaaataagcgtaccgagacctgcttgaagaagtggtctcggtacgctttcaaaccaaccctggagcggtttgtttgtggtgagaatatgatccgtgctaaaacaggtccaaccgcaaaaagtactgcgccttttggactaatccagctgccgtaggctgatgcgctgtgcattatgggatatggaggaaaaatagttgttgacagcgcttttccaacagagagagagagagagagaggggaaaacgttacctgatggatcattggtaatatttccgcaagatgaccatgtggcagtttagctaaattaattcacgtctcctcctgaagtgacgagcgatgcattaaaacactgttttccagccacagccgcgcttcattctcgaaatgtatagtttgtctaaagcagggaaaCAATcagtgcagtcgtc

Function

GO:

id name namespace
GO:0061134 peptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function
GO:0016215 acyl-CoA desaturase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003171 lncRNA upstream 30688 53656231 ~ 53658289 (+) True XLOC_000694
TCONS_00003170 lncRNA upstream 178354 53508505 ~ 53510623 (+) True XLOC_000692
TCONS_00003169 lncRNA upstream 197672 53490099 ~ 53491305 (+) True XLOC_000691
TCONS_00003168 lncRNA upstream 301343 53379992 ~ 53387634 (+) False XLOC_000690
TCONS_00001165 lncRNA upstream 301343 53384935 ~ 53387634 (+) False XLOC_000690
TCONS_00001169 lncRNA downstream 31961 53727516 ~ 53727854 (+) True XLOC_000696
TCONS_00002880 lncRNA downstream 65242 53760797 ~ 53770739 (+) False XLOC_000697
TCONS_00003173 lncRNA downstream 65293 53760848 ~ 53767584 (+) False XLOC_000697
TCONS_00003174 lncRNA downstream 65293 53760848 ~ 53769747 (+) False XLOC_000697
TCONS_00002881 lncRNA downstream 69820 53765375 ~ 53770739 (+) True XLOC_000697
TCONS_00001167 mRNA upstream 153412 53515089 ~ 53535565 (+) True XLOC_000693
TCONS_00001161 mRNA upstream 300063 53374454 ~ 53388914 (+) False XLOC_000690
TCONS_00001163 mRNA upstream 301538 53377432 ~ 53387439 (+) False XLOC_000690
TCONS_00001159 mRNA upstream 327869 53321878 ~ 53361108 (+) True XLOC_000688
TCONS_00001158 mRNA upstream 389953 53279861 ~ 53299024 (+) True XLOC_000685
TCONS_00001168 mRNA downstream 19179 53714734 ~ 53730536 (+) False XLOC_000696
TCONS_00001170 mRNA downstream 146789 53842344 ~ 53863308 (+) True XLOC_000698
TCONS_00001171 mRNA downstream 223555 53919110 ~ 53941906 (+) True XLOC_000700
TCONS_00001172 mRNA downstream 250379 53945934 ~ 53953532 (+) False XLOC_000701
TCONS_00001174 mRNA downstream 258675 53954230 ~ 53963933 (+) False XLOC_000702
TCONS_00001166 other upstream 301096 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 320943 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001154 other upstream 627780 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001126 other upstream 1553475 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001119 other upstream 2005359 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001180 other downstream 357549 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001186 other downstream 490484 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001221 other downstream 1432910 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001233 other downstream 1598070 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 3652343 57347898 ~ 57355033 (+) False XLOC_000813

Expression Profile

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