RNA id: TU88763


Basic Information

Item Value
RNA id TU88763
length 440
lncRNA type sense_over
GC content 0.40
exon number 4
gene id G77860
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1413791 ~ 1437922 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCACACAGGAGCGAAGAGACAGCGGTGAGGGGCGAAGATGGCGATGCGGCGCGGTCTGAGCGAGAAGACCTCATTAAAACGAAGAATGTCAACGAAGAGAATGGCGTCGACCTGCTCAGATGAAAGAGCAGATCGCAACGGTGAGAACATGGAATCAGAACGACTGGATAAAAGATGATGGAATTTCATTCAGTCTCATGCCATATAAATGTTCCTGATCTCCTGAACGTCAGAGAAAGATGAGGAAAAGGATTTTTGCCATGACGTTTGCCTGAGGAGGAAACGGCAGCAAAATTTCAAGGAAGGGAAGACTACTCTAACCAATTCTGGACAGTCAAGTGGAGACACTACTGCTTAATGAGGAAGATGGCGGCTCATATTTTGCTTTTGGATTTGGAAAGAAAGACATTTTATTTGTTTGTGATTTGCTATGATGTTTTACTTCATTCGCTGATGTACAAATGTATGTATTGTGTCATTTTAATGCATTGTTGTTTTAATGAAATGCCTGTATTTCAAAATTTAAAAATGCTTTTTTTTTGTTGCCTTTTTTAAAAGAAAAATAAAAAAGTTTCGTGATTGAACTATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88800 lncRNA upstream 111752 1317721 ~ 1317963 (+) True G77895
TU88799 lncRNA upstream 112052 1317251 ~ 1317663 (+) True G77894
TU88719 lncRNA upstream 242524 1186909 ~ 1187191 (+) True G77829
TU88716 lncRNA upstream 248287 1181202 ~ 1181428 (+) True G77826
TU88698 lncRNA upstream 263098 1160776 ~ 1166617 (+) True CI01000013_01115756_01164524
TU88780 lncRNA downstream 32898 1470820 ~ 1471360 (+) True G77875
TU88824 lncRNA downstream 46552 1484474 ~ 1484721 (+) True G77918
TU88835 lncRNA downstream 67961 1505883 ~ 1506110 (+) True G77929
TU88852 lncRNA downstream 92398 1530320 ~ 1530575 (+) True G77946
TU88914 lncRNA downstream 175587 1613509 ~ 1613776 (+) True G78008
CI01000013_01335438_01381270.mRNA mRNA upstream 48445 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01275415_01295230.mRNA mRNA upstream 134391 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01220794_01229752.mRNA mRNA upstream 198757 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01115756_01164524.mRNA mRNA upstream 265191 1115756 ~ 1164524 (+) False CI01000013_01115756_01164524
CI01000013_01036536_01049545.mRNA mRNA upstream 379833 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
CI01000013_01443540_01469011.mRNA mRNA downstream 5618 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01629280_01635701.mRNA mRNA downstream 191306 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_01762491_01764612.mRNA mRNA downstream 323836 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01950237_01964249.mRNA mRNA downstream 512093 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01989323_01993472.mRNA mRNA downstream 550609 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
TU88574 other upstream 476746 946521 ~ 952969 (+) True G77695
TU88411 other upstream 720166 708833 ~ 709549 (+) True G77533
TU90328 other downstream 1028843 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2146086 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2627011 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3397156 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4618376 6056662 ~ 6056782 (+) True G81681

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026536 False 579 nonsense_mediated_decay 0.41 5 NC_007129.7 24990268 ~ 24996647 (-)