RNA id: TU91446


Basic Information

Item Value
RNA id TU91446
length 252
lncRNA type intronic
GC content 0.35
exon number 2
gene id G80324
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3726950 ~ 3727387 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTCACTGATGCTTCAGAAGGAAACACGATGCATTGAGAGTCAGGGGGTGAAAACTTTTGAACAGGATGAAGAGGTCCAATTTTTTCTTATTTCACTTGAATATCATTTTTTTTCATTTAGTACCACCCTTCGGAAGCAACAGAAAATACTTGCATGTTTCCCGGAAGACAAATTAAATACAATTTACCTTGATCTTCAAATTCCAAATGTTTTCACCCCCCATCTATTAATGCATCATGTTTTTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91392 lncRNA downstream 15910 3708952 ~ 3711040 (-) True CI01000013_03710900_03714487
TU91397 lncRNA downstream 18746 3706731 ~ 3708204 (-) True G80275
TU91433 lncRNA downstream 66287 3659877 ~ 3660663 (-) True G80311
TU91416 lncRNA downstream 94680 3631321 ~ 3632270 (-) True G80294
TU91383 lncRNA downstream 158728 3568018 ~ 3568222 (-) True G80264
TU91447 lncRNA upstream 1765 3729152 ~ 3729392 (-) True G80325
TU91448 lncRNA upstream 4211 3731598 ~ 3731797 (-) True G80326
TU91488 lncRNA upstream 54865 3782252 ~ 3782682 (-) True G80364
TU91489 lncRNA upstream 57908 3785295 ~ 3785871 (-) True G80365
TU91501 lncRNA upstream 95931 3823318 ~ 3835856 (-) True G80377
CI01000013_03710900_03714487.mRNA mRNA downstream 12463 3710759 ~ 3714487 (-) False CI01000013_03710900_03714487
CI01000013_03588879_03592043.mRNA mRNA downstream 134907 3588767 ~ 3592043 (-) True CI01000013_03588879_03592043
CI01000013_03585420_03587386.mRNA mRNA downstream 139564 3585252 ~ 3587386 (-) True CI01000013_03585420_03587386
CI01000013_03555460_03561041.mRNA mRNA downstream 165357 3555379 ~ 3561593 (-) True CI01000013_03555460_03561041
CI01000013_03538324_03552770.mRNA mRNA downstream 174180 3538324 ~ 3552770 (-) True CI01000013_03538324_03552770
CI01000013_03793962_03821347.mRNA mRNA upstream 66258 3793645 ~ 3821347 (-) True CI01000013_03793962_03821347
CI01000013_03875165_03877327.mRNA mRNA upstream 147721 3875108 ~ 3877458 (-) True CI01000013_03875165_03877327
CI01000013_03879587_03884308.mRNA mRNA upstream 151946 3879333 ~ 3884308 (-) True CI01000013_03879587_03884308
CI01000013_03897674_03902314.mRNA mRNA upstream 169207 3896594 ~ 3902314 (-) True CI01000013_03897674_03902314
CI01000013_03911586_03916513.mRNA mRNA upstream 183222 3910609 ~ 3916634 (-) True CI01000013_03911586_03916513
TU91391 other downstream 3343 3719433 ~ 3723607 (-) True G80271
TU91381 other downstream 159413 3565171 ~ 3567537 (-) True G80262
TU90747 other downstream 911558 2813247 ~ 2815392 (-) True G79690
TU89207 other downstream 3700053 26528 ~ 26897 (-) True G78296
TU91525 other upstream 176680 3904067 ~ 3906240 (-) True G80399
TU91578 other upstream 337555 4064942 ~ 4066017 (-) True G80443
TU92144 other upstream 829481 4556868 ~ 4558903 (-) False G80954
TU92232 other upstream 1021422 4748809 ~ 4750561 (-) True G81032
TU92796 other upstream 2012139 5739526 ~ 5744038 (-) True G81547

Expression Profile