RNA id: TU98375


Basic Information

Item Value
RNA id TU98375
length 382
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G86386
representative True

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 422128 ~ 422509 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTATATAGATTTATTTGCATGGAAACTTGTGTCCACACTGTGACTCTCCTCCTGCGGTGACAGTGATGGACGATCTATTGACAGCATCTTTCACTGGCAAGTTGTTGTGAATAATTGCTACAGATGGAAGAGTGTGTAGAACACTAAAGCATAAAGATTAAGATAAGCGGGAGTAAAGGAGGCTTCAAGTGGCCTTATCACTTGTTCACCAGGACCATGGAGCGAGATTTAGGAAGGTTATCAATGCTGACCTCTGTGTAGGAGCCATTCATCAAGTCAAGATGTTCAGATAGTGACAGTCAGAATGATCTCCATCATTATGTGCAATGACACTGGAATTAAACATCTATTACAACTCCAATACAAAGCCTGAACAATGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98374 lncRNA downstream 156 421616 ~ 421972 (-) True G86385
TU98370 lncRNA downstream 2622 417291 ~ 419506 (-) True G86381
TU98312 lncRNA downstream 74708 283652 ~ 347420 (-) False G86329
TU98396 lncRNA upstream 15030 437539 ~ 437773 (-) True G86402
TU98402 lncRNA upstream 114100 536609 ~ 536854 (-) True G86408
TU98405 lncRNA upstream 120068 542577 ~ 542876 (-) True G86411
TU98466 lncRNA upstream 324578 747087 ~ 747325 (-) True G86470
TU98468 lncRNA upstream 325537 748046 ~ 748344 (-) True G86472
CI01000014_00094545_00097426.mRNA mRNA downstream 324702 94176 ~ 97426 (-) True CI01000014_00094545_00097426
CI01000014_00058937_00066714.mRNA mRNA downstream 355414 58727 ~ 66714 (-) True CI01000014_00058937_00066714
CI01000014_00046124_00047713.mRNA mRNA downstream 374415 45107 ~ 47713 (-) True CI01000014_00046124_00047713
CI01000014_00466896_00506088.mRNA mRNA upstream 43703 466212 ~ 506088 (-) True CI01000014_00466896_00506088
CI01000014_00660099_00665508.mRNA mRNA upstream 237481 659990 ~ 665698 (-) True CI01000014_00660099_00665508
CI01000014_00672822_00683285.mRNA mRNA upstream 249726 672235 ~ 683862 (-) True CI01000014_00672822_00683285
CI01000014_00696364_00697192.mRNA mRNA upstream 273855 696364 ~ 697192 (-) True CI01000014_00696364_00697192
CI01000014_00753559_00756594.mRNA mRNA upstream 330975 753484 ~ 756594 (-) True CI01000014_00753559_00756594
TU98536 other upstream 562709 985218 ~ 985744 (-) True G86530
TU98538 other upstream 565035 987544 ~ 988027 (-) True G86532

Expression Profile