RNA id: CI01000014_00672822_00683285.mRNA


Basic Information

Item Value
RNA id CI01000014_00672822_00683285.mRNA
length 2094
RNA type mRNA
GC content 0.44
exon number 7
gene id CI01000014_00672822_00683285
representative True

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 672235 ~ 683862 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTATCTTACTTTCTCTATTACTGTTCACCCCAAAGTTTGGATCAAAATATAATGTTTCATAATTTCTGAATCTGAAAACACGCCTCTTTTTTTCTGTCAACACTGACATTGAGCAATTATGAATGTAATATTTATCAACAATTCTAAATAAAATAGATACATAATTATAAAACAATAACATATCTGCACATTTTATACACACACACAAAAAAATAAAATAAAAATAATATAACCGTTGACGTGTTAATGAGATCCTATTGCAGTAAAGGAAAACGCCCAACGACGCATTTGGCAACCAATCAGAGCGGAGTATCAGCTGTGAGCGTCCAATTAGCGACGAGCCGGTTGTCGGTGTTTGATGTGAGGAAGGCTGAAGTGAAAACAACTGTGGGTCAGGGTGGGACTCTGAAGGCCGTCGGCTTCTCATTTCCTCACAGGATTCCCTTCTTTAATTACTCCAAGATCCCTGGCCACATGTACGTTTTAAAGTAATCAGTCGATTTCGGGTGGATATTCGTGGAAAGCTGGGCGAAGGTAGATCAGAAATCTGTGAAAATCGAGTGAAAAAAAGCAGACATGGACGAAAAGGCGTTTACGAAAGAGCTGGATCAATGGATCGAACAGCTGAATGAATGCAAACAGCTCTCAGAAAGCCAAGTCAAGAGCCTCTGTGAGAAGGCTAAAGAAATCCTGACCAAGGAGTCTAATGTGCAGGAAGTGAGATGTCCGGTCACTGTGTGTGGAGATGTTCACGGCCAGTTTCATGACCTCATGGAGCTCTTCAGAATCGGAGGAAAGTCACCAGACACGAACTACTTGTTCATGGGAGATTATGTTGACCGAGGCTATTATTCTGTGGAAACAGTCACACTGCTCGTCGCCCTCAAGGTTAGGTACCGTGAACGCATTACAATACTTCGAGGGAACCACGAAAGCAGACAGATCACACAAGTGTACGGCTTTTATGATGAGTGCTTACGGAAATACGGCAATGCTAATGTTTGGAAATACTTCACAGACCTCTTCGATTACCTTCCCCTTACTGCCTTGGTAGATGGTCAGATATTCTGTCTTCATGGAGGATTGTCACCGTCCATAGACACTCTTGATCACATCAGAGCGCTGGATCGTTTACAGGAAGTTCCTCACGAGGGACCCATGTGTGATTTATTGTGGTCTGATCCGGATGACCGTGGAGGTTGGGGTATTTCTCCTAGAGGTGCAGGCTACACTTTTGGGCAGGACATATCTGAGACATTCAACCATGCAAATGGCCTTACGCTGGTCTCTAGAGCTCACCAGCTAGTGATGGAGGGCTACAACTGGTGCCATGATCGCAATGTGGTAACGATTTTCAGCGCACCCAACTACTGTTACCGGTGTGGTAATCAGGCAGCCATCATGGAGCTTGATGACACCCTGAAGTACTCATTCCTGCAGTTTGACCCCGCACCGCGCAGAGGAGAGCCGCACGTCACTCGCCGTACCCCCGACTACTTCCTGTGAATCTCTCTCTCTGCACAGTATTGCCATGATATAATAATCTTCATTCAGTTTAAAATAAGAGGAGAGGAATGGGCAACAGTATATAAAAAAGATTAAAGAGAAAACTGATCCAGTGAGAAATGTCTGTGGACCAAAAGGTGTGTGCCATATCCAAACCGATCCGGCTTCAGTCCGACACCACGACCATGAGATATCAGCTCCGTTCCCGTCTGCTCTTGCTTCTGTCCTCCGGTCTCTAGATGAATACAGTCAACAGGCTGTGAAACCCTTCTGAACCCTCTGTGTGTACTTTCTTCTTTTTTTTATGTCTGTTTGCACTTTTTTCAACTGAACGACAGCTAACACATGTCAGTTTTACAGTTTATTTCCCCTTTTTTTTCCATGTGGTGAGGGAGGAATGAGATTAGATGCTTCTGTATCTCAACCACCAATATCTAGAGGATAATCTTTCCTACAGTGAAAACATGTTAAACAAATGCCAACTACGTGATATGTGGCAGACTAAGATGGCATGCCATCATAGGAATGCTGGAATAGCTTCATATGATGGTTTGTGTCTGTATAAAGGGTACCAGTTCAACAATAAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98405 lncRNA downstream 129359 542577 ~ 542876 (-) True G86411
TU98402 lncRNA downstream 135381 536609 ~ 536854 (-) True G86408
TU98396 lncRNA downstream 234462 437539 ~ 437773 (-) True G86402
TU98375 lncRNA downstream 249726 422128 ~ 422509 (-) True G86386
TU98374 lncRNA downstream 250263 421616 ~ 421972 (-) True G86385
TU98466 lncRNA upstream 63225 747087 ~ 747325 (-) True G86470
TU98468 lncRNA upstream 64184 748046 ~ 748344 (-) True G86472
TU98469 lncRNA upstream 64634 748496 ~ 748847 (-) True G86473
TU98470 lncRNA upstream 65215 749077 ~ 749578 (-) True G86474
TU98478 lncRNA upstream 74101 757963 ~ 758187 (-) True G86482
CI01000014_00660099_00665508.mRNA mRNA downstream 6537 659990 ~ 665698 (-) True CI01000014_00660099_00665508
CI01000014_00466896_00506088.mRNA mRNA downstream 166147 466212 ~ 506088 (-) True CI01000014_00466896_00506088
CI01000014_00094545_00097426.mRNA mRNA downstream 574809 94176 ~ 97426 (-) True CI01000014_00094545_00097426
CI01000014_00058937_00066714.mRNA mRNA downstream 605521 58727 ~ 66714 (-) True CI01000014_00058937_00066714
CI01000014_00046124_00047713.mRNA mRNA downstream 624522 45107 ~ 47713 (-) True CI01000014_00046124_00047713
CI01000014_00696364_00697192.mRNA mRNA upstream 12502 696364 ~ 697192 (-) True CI01000014_00696364_00697192
CI01000014_00753559_00756594.mRNA mRNA upstream 69622 753484 ~ 756594 (-) True CI01000014_00753559_00756594
CI01000014_00775503_00794925.mRNA mRNA upstream 91016 774878 ~ 794925 (-) True CI01000014_00775503_00794925
CI01000014_00821373_00846608.mRNA mRNA upstream 137312 821174 ~ 848060 (-) True CI01000014_00821373_00846608
CI01000014_00852874_00874645.mRNA mRNA upstream 168653 852515 ~ 874736 (-) True CI01000014_00852874_00874645
TU98536 other upstream 301356 985218 ~ 985744 (-) True G86530
TU98538 other upstream 303682 987544 ~ 988027 (-) True G86532

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00039118 True 1947 mRNA 0.54 7 NC_007132.7 45351660 ~ 45363956 (-)
bowfin (Amia calva) AMCG00011269 True 930 mRNA 0.48 7 CM030133.1 16133452 ~ 16141505 (+)