RNA id: CI01000014_00852874_00874645.mRNA



Basic Information


Item Value
RNA id CI01000014_00852874_00874645.mRNA
length 2526
RNA type mRNA
GC content 0.47
exon number 11
gene id CI01000014_00852874_00874645
representative True

Chromosome Information


Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 852515 ~ 874736 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACGTGAGATGAGTCTGTCTCCTCCCATCTGTGTCTGAAAATAAAGCCTCGCTCTCCTCTGAAGGATTTGTCGCAGATGTGCTGCGACTGCCATGAACTCTCCAGACTACGATGACAGCACCGCGTTCCTGGGAGACTGGGGACCTTTCCAAAGGACGGTGTTCACTCTTTTGTGTTTGAGCATTATTCCCAATGGCTTCACGGGGTTATCCATGGTGTTCATGGGCGATACACCCGCTCATCACTGTCTCATTCCCGCGGCTCTGAACATCACTGATGAATGGAGAAACGCGTCTATTCCTCTGGATGAGGACGAGGATTCTCGACTCACTAAATGCTCAAGACACCGAGTGGACATCGTGAAGAACTATTCGGACAGAGGTTTGCTCCCGTGGGTGGATGTGAATGTCTCGTCTATTCCTCGAGAAGCCTGTATGGACGGCTGGGAGTATGATAAAGGAACGTACATCTCCACGATTGTTACAGAGTGGGATTTGGTGTGTTCAGATGACTGGAGAGCTCCATTGACCACCTCACTCTTCTTCTGTGGTGTTCTGATTGGTTCTGTCATCTCTGGACAGATGTCTGACAGGTTTGGCAGGAAAATAGTGCTGTTTGTAACCATGGGGATTCAGACGGTATTCACCTTCATTCAAGTCTTCTCCCCATCTTGGTTGATTTTTTGCTTGTTGTTTTTCATTGTTGGAATGGGCCAGATTTCAAACTATGTTGCAGCATTTGTTTTAGGAATGGAAATATTGAGCCCATCCATTCGTGACCTCTACTCCACTCTTGGTGTGTGTCTTTTCTTTTCAATGGGGTATATGATGCTTCCGCTGACTGCCTACTTTCTGCGAGACTGGAGAACACTGCTGCTGGCCCTCACCGTTCCTGGATTATTCTGCATACCCCTTTGGTGGTTTATTCCAGAGTCTCCGCGATGGCTGTTGTCTCAGGGGAGGGTTGACGAGGCAGAGGCAATTCTGAGAAAGGCTGCCAAAATGAACGGGGTTAAAGCCCCTGATGTCATTTTTCCCCTGCATCAGTCAAGGGAAAACGCTGGAAGGCTGCAGACCTACGGTCTCTGTGACCTGGTGAAGTCCAGCAACATCCGCTGCATTACTGTCCTGCTGTGCCTGGTCTGGTCGGCTGTTTCAATCGGATACTGTGCCTTGTCTCTGAACACATCCAGTCTGCATGGGAACATCTACCTGAACTGCCTCCTGTCAGCAGTAGTGGAAGTGCCTGCGCTCATCATGGCCTGGCTGATGCTCCGACACTGGCCACGCCGCCTCTGCTTGTCCTCTACCCTGTCATTAGGAGGACTGGTTCTTCTCTTCATACACCTCATACCACAACATATGAGCTCTGTTGCCATTTCTCTGGTGATGCTGGGAAAGTTCGGCCTGTCAGCAGCATTTGCGATCGTGTACCCAGCGACTGCAGAGCTGTACCCCACCATTCTGAGGAACACGGCTTTAGGAACCTGCTCCATGGCATCCAGAGTCGGCAGCATTTCTGCACCATACTTCATCTACTTAGGAGGCTACTACAAGTCTTTGCCGTACATCTTAATCGGCAGTCTGAATGTTCTCTCCGGGTTGCTCTACCTTCTGCTTCCAGAGAGTCTGGGATCACCTTTACCAGAGACTATCAGTCACATGCAGACAGTAGTTTGGTCTAAAAAAAGACGTTTTACTTACAGTCCAACCAACAAGAAGAGAAAACTAGTAAAATGCAGAAAAGTGACGTTCAGTGATATTGTGAGGGTTCGAAACGTGTCAAGCCATAAACATGATAAGACAGAGCAGCAGGACGAGCGGGTTCAGCCAGACGGAAGTGCGTCAGAGGAATCCTCAGATATTCCCTCAGGGCCTGTGAGGTTCTTTGACTTTGCAGATGAGTTTGATAGAGAATCCTTTTTCCACAGACTGAAACAAACACCCTCGTTTACGTTTCCTGCCAAACCGGTAACTCTTTTCCTTATTCCCCATAGAGACACTTTTGACACTGAACGGGGATTCGTGATCCTTTCGGCATGTTTTTCTGTTCTTTATAGATCCTCTCCACCATCTGAGAGGACTTCAGCACAAGTGGAGTTTGATCGGGAGTTCAGGAGCAAATCTGACCAGCAGAGGGCGACTCAGACTCGCAGTGAACAGCGTTAGATTTCTACACATATTTTATCTGAATATAATGCCCATGCAGTGTTTTTGGCTTTGCTGTGCTCCTGAAGACCTCAAGAGAGATGAATATGTATTTATCTGGGTCAGACTGTTCAAGAAAACATAAAGGGATGATTAATATACAACTTGTCCTCTTATGGAACATACCTATGTGAAATGAAGTCGAGTTATGAAATCTGTACTTAACTGATGATTTTAATGCAGTACTGAAAATGAGAAGCTAATGATGCCTTGCAGTGCCAGCTGAAGTGGAATTTAATGGGAAGAGAAACTTATAAATGAAATTATTTATATTAGATGTTTATGTGTAAAAGGTTAACAAATACTAAAAGACAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU98488 lncRNA downstream 85689 766597 ~ 766826 (-) True G86492
TU98487 lncRNA downstream 86579 765457 ~ 765936 (-) True G86491
TU98479 lncRNA downstream 93909 758284 ~ 758606 (-) True G86483
TU98478 lncRNA downstream 94328 757963 ~ 758187 (-) True G86482
TU98470 lncRNA downstream 102937 749077 ~ 749578 (-) True G86474
TU98496 lncRNA upstream 2718 877454 ~ 878486 (-) True G86498
TU98504 lncRNA upstream 19033 898609 ~ 898684 (-) True G86501
TU98505 lncRNA upstream 19033 893769 ~ 895515 (-) True CI01000014_00891730_00895427
TU98518 lncRNA upstream 53642 928378 ~ 928687 (-) True G86514
TU98519 lncRNA upstream 54973 929709 ~ 929933 (-) True G86515
CI01000014_00821373_00846608.mRNA mRNA downstream 4455 821174 ~ 848060 (-) True CI01000014_00821373_00846608
CI01000014_00775503_00794925.mRNA mRNA downstream 57590 774878 ~ 794925 (-) True CI01000014_00775503_00794925
CI01000014_00753559_00756594.mRNA mRNA downstream 95921 753484 ~ 756594 (-) True CI01000014_00753559_00756594
CI01000014_00696364_00697192.mRNA mRNA downstream 155323 696364 ~ 697192 (-) True CI01000014_00696364_00697192
CI01000014_00672822_00683285.mRNA mRNA downstream 168653 672235 ~ 683862 (-) True CI01000014_00672822_00683285
CI01000014_00880909_00886292.mRNA mRNA upstream 6005 880741 ~ 886292 (-) True CI01000014_00880909_00886292
CI01000014_00891730_00895427.mRNA mRNA upstream 16941 891677 ~ 895581 (-) False CI01000014_00891730_00895427
CI01000014_00954505_00954792.mRNA mRNA upstream 79705 954441 ~ 955012 (-) True CI01000014_00954505_00954792
CI01000014_00960029_00966472.mRNA mRNA upstream 84763 959499 ~ 966472 (-) True CI01000014_00960029_00966472
CI01000014_01018144_01018740.mRNA mRNA upstream 143284 1018020 ~ 1018869 (-) False CI01000014_01018144_01018740
TU98536 other upstream 110482 985218 ~ 985744 (-) True G86530
TU98538 other upstream 112808 987544 ~ 988027 (-) True G86532

Expression Profile