RNA id: CI01000018_07011537_07045271.mRNA


Basic Information

Item Value
RNA id CI01000018_07011537_07045271.mRNA
length 4609
RNA type mRNA
GC content 0.50
exon number 27
gene id CI01000018_07011537_07045271
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 7010961 ~ 7045271 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATATATGGGACCTGGTGGTTGTGCTCTGTTTGCCATGCGCGTATCAACACGGACAAGTTTTATATTTAGACATCTGTTCCAGATGATTCAATAGTGACTGTACATGCAGTAACAGCCGTGAGACTTTTTTTGCGCTCTAAACTTGCGCAGTTTTTCTTCTCTTATGAAATATACCTAACGCATGAACGGAAGGACACACTTTGAGGAAATGATCGGATCAGTTTGCAGAGAGGGCAGGAGGAATGACTTCCTCAAATAGGATGGTAATGCGTGTCTTTGGAGACATAGAGTGCGCGGTGCGCTTTAAGTTTTTCTGACTTTCTGCACTATCCGCGTTAATTCACAAGTGCTGCGTTTTGTATAATTGCATAACCGCTGGCGCAAACGAGATAAAACTGGACCGGATTGTAATATGTAGTGATGCGCGCTGCTTTAATGAATCGCAAGACGCTGGACGTCACAGCCACGCGCGTTTCCGTGCCACAGGTGCGCACTAAACTTTGGTTATTCATTATTGATTAACGGCGCAAAGAAAAGGAGGAACGCGCACAGGGACAAAACAATTACTCGCACTATGGAGATCATGTCCAATCAACCCACAGCAGAGGCTGGTGGCGACCACACCGCAGCGGTTTCCATGTCTGCAGGCGTGGAGAGGGCTGATGTGACCAGCCCGAGTCCGGTGACCAAACAGAGGTCTCTACGGGCGGTTTATGTGCTGAATGATGGACTGAAGGCAGTGGCCGCGAACAGCCCGGAATCCGGGGCGCTACAGTGTCTCCAGCGCGCCTGCGACGCGGAGAGTGCCATATTAACTACAGTTACTTTTGGACGATTAGACTTTGGGGAGACAACGGTGCTTGATACTTTTTATGATGCAGACATTGCAGTTGTGGACATGAGCGATGTATTCAGACAGCCCTCCCTGTTTTATCACCTCGGTGTGCGTGAGAGCTTTGACATGGCCAACAATGTCATCCTCTACCATGACACGGACCCTGACACGGCACAGTCCCTTAAGGACATGGTGGCACAGAAAAACACAGCCTCCAGTGGGAACTACTATTTTATCCCTTACTTGATGACGCCCAACAACGAGTACTTGTGCTGTGAGAACGTGGCCCAGCGCAGAGCATCAGAGTACATGCAGCCCAACTGGGACAACCTTCTAGGACCTCTGTGCGTCCCATTGGTGGACCGCTTTGTCAACTTACTCAAAGACATTCACGTCACGTCTTGCGCTTCATACAAAGACACACTTCTGAACGACATCCGAAAAGCTCGAGATAAATACCAGGGTGAGGAGCTGGCCAAAGAGCTTACCCGGATCAAACTCCGCATCGACAACACTGAGGTTTTGACTCAGGACATTGTGATGAACCTGCTTTTCTCCTACAGAGATATACAGGACTATGATGCCATGGTTAAATTGGTACAGACCATTGAGATGTTACCCACCTGTGATTTGGCCATCCAGCCCATGATTCAGTTCCACTATGCTTTTGCGCTCAATAGACGAAACAGCCCTGGAGATCGAGAGCAGGCTTTGCGTGTGATGTTGCAGGTTCTTCAGTCATGTGAGCACCCTGCACCTGATATGTTCTGCTTGTGTGGGCGTATTTATAAGGACATCTTCCTCGACTCTGACTGCAAGGACACCAAGAATAGAGACAACGCCATCCAGTGGTATAGAAAAGGCTTTGAGCTGCAGCCCACTCTCTATTCAGGCATTAATCTGGCAGTGCTGCTTATAGTATCCGGGCAGCAGTTTGAGACTTCCATAGAACTCAGGAAGATCGGTGTGAGGTTGAACAGTCTGCTTGGCCGTAAAGGCAGTCTGGAGAAGATGAATAACTACTGGGATGTGGGGCAGTTCTTTACTGTCGGTATGCTTGCCAATGACATCCCCAAAGCTGTCCAGGCCGCAGAGAAACTCTTCAAACTCAAACCACCCATATGGTACCTGCGATCAGTTGTCCAAAACCTTCAGTTGATTCAGCATTTTAAGAAGCAGAACACTGAGCATTCTCCTCAAAGAGAGAGACTCAACTTCTGGATGGACATTATCGTGGAGGCCACACAGGGAACCACAAATGGCCTCCGTTTTCCGGTGTTGATTCTAGAGCCGACTAAAGTGTACCAGCCCTCGTACGTGTCCATTAACAGTGAAGCTGAAGAGAAGAATGTTTCTATATGGCACGTGTCCCCTGCTGAGACGAAGGGAATACATGAGTGGAACTTCACAGCATTATCCATCAAAGGCATAAGCATCTCAAAATTTGACGAGCGCTGCTGCTTTTTGTATGTCCATGATAATTCGGATGACTTCCAGATCTACTTCTCCACAGAGGACCAGTGTGGCAGATTCTGCTCCATGGTGAAGGAGTTGATCACAGACGGATCAGGAAATGCGGTCGAGCTGGAGGGGGAGGGAGACGGGGACACACTGGAGTACGAGTACGACTACAATGAAAATGGCGACAGGGTGGTTCTAGGTAGGGGAACTTACGGAGTGGTCTACGCAGGGAGAGACCTGAGTAACCAGGTGCGCATTGCCATCAAAGAGATCCCAGAGAGAGATAGCAGGTATTCCCAACCACTGCATGAGGAAATAGCCCTCCACAAGTACCTGAAACACAGGAACATTGTTCAGTACCTGGGCTCTGTGTCAGAGGATGGCTATATCAAGATCTTCATGGAACAGGTCCCTGGAGGAAGTCTGTCAGCGTTGTTACGTTCAAAGTGGGGTCCTCTTAAAGAAGCCACCATAATCTTCTACACTCGGCAGATCTTGGAAGGACTTCGTTATTTGCATGAGAACCAAATCGTTCATCGGGACATCAAGGGAGACAATGTCTTAGTCAACACCTACAGTGGCGTGTTGAAAATCTCAGACTTCGGCACGTCCAAGAGGCTGGCTGGAGTCAATCCCTGCACAGAGACGTTTACTGGCACATTGCAGTACATGGCCCCAGAGATCATCGATAAAGGCCCTAGAGGTTACGGGGCACCTGCTGATATCTGGTCCCTGGGCTGCACCATCATAGAGATGGCGACAGGCAAACCTCCTTTCCATGAGCTGGGAGAGCCACAGGCTGCCATGTTCAAGGTGGGCATGTTTAAGATCCATCCGGAGATCCCAGAATCTCTTTCGTCAGAGGCCAAATCCTTCATCCTTTCCTGCTTTGAGCCTGACCCAAATAAACGAGCGACGGCCGGGGACCTGCTCAAGGATCTGTTCCTGCGTCAAAACATCAAAGGCAAAAAGAACAAGATTGCTTTCAAACCCTCAGGCAAACACACAGAGCTGCCAAGCCCCCTCCATAGCCCAGCATTCCTGCTTCTCGCCGCTGTCTGGGATACTCGCAACAGGTCCGAACTGCTCTCAGCCGGCCGATTGCAGTCCAGATTGAGCTTACACAAGAGATGGGTAGGAGCAACAGGACCTGGAAAAGGGGAGGGATCAGAGGAAAACCAACAGTACGGCCTCACGTTACCTTCAAAAATTGTTTCCATCCTGCCGCACATGTCAGCTACCCCGCAGTCCGTGAAAAGCATTCTCAGGGTGTGGTGTTTCACACAACCATGCATACTGCTTTCTTACAAACCGCTCAAATTTCTTTTTGTCATTGACAGAAGACAACAATACTACATCCGCAGTGTTTCGTTACCAGTACAGCTGCAGACGGAGGCCACAGGGAGCAGCAGCAGTGAACCGGGCTCCGTGTCTCCAGACTGCGACTCCAAACAAGATGTGTTTTTCGAGAAGAAAAAACGCTCTAGCTCCGAGAACCTCATCAAACCGCCCAGCTCAAACTTCCTCAGTGTTCCAGATGAGAGTCCGACAGCAGAAGACCGCAGCTCTCCAGCCTCTTCTGAGAACAGTGACTCCGGCCTCTTCCTGCTGAAGAAAGACAGTGAAAGACGTGCCATACTCTACAAGGTCCTCAATGAGGACCAGGATAAAGGTCAGGAAGAGCTGAAGTTGTCTGTGGACCACATCAAACAGATCATCTGCATCTTACGGGACTTTATACGCTGCCCTGAGCGACGCGTCATGGCAACCACCATATCCAAACTCAAATTGGACCTGGACTTCGACAGCACGTCAATCAACCAGATCCAACTTGTTCTGTTTGGTTTCCAGGATTCTGTGAACAAAGTGTTGAGGAACCACCACATTAAACCCCACTGGATGTTTGCCATGGACAACATCATCAGAAGGGCTGTGCAGGCAGCTGTTACAATTTTAATTCCAGAGCTGCAGACTCATTTCGGGCCTGCATCGGAAAGTGAGGGGGCAGATAAGGATGCAGATGAAGTAGATGAAGAGGATGATGGAGAGTTTGGATCAGTGGCACGTACGACGCAGGAAGATCAAGCCCTCACATCTGGAGTCAGCACCCTGAGTTCAGTCATATCCCATGAGGCTCAGCGGCCACAGCATCCGCTGGGAGCCCAGCTCGGACGTCTCAAACAGGAAACTACCAGACTGCTTGAAGAACTGGTACAGAAAGAGAGGGAGTATCAGCAGGTACTGAGACAAACTCTCCAACAGCGGGTACACGACATCGAGCTTATCAGGATCAGACAGCAGTCTGCTGCAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K13986 MAP3K15; mitogen-activated protein kinase kinase kinase 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121018 lncRNA upstream 75868 6934871 ~ 6935093 (+) True G106467
TU120988 lncRNA upstream 118179 6890421 ~ 6892782 (+) True G106445
TU120938 lncRNA upstream 191191 6803075 ~ 6819770 (+) True G106403
TU120889 lncRNA upstream 211346 6791323 ~ 6799615 (+) True G106361
TU120887 lncRNA upstream 232582 6765674 ~ 6778379 (+) False G106361
TU121259 lncRNA downstream 17195 7063432 ~ 7063509 (+) False G106657
TU121267 lncRNA downstream 17195 7063432 ~ 7063509 (+) True G106657
TU121260 lncRNA downstream 17232 7063432 ~ 7063509 (+) True G106657
TU121310 lncRNA downstream 20783 7066054 ~ 7066343 (+) True G106687
CI01000018_06968918_07004161.mRNA mRNA upstream 6582 6968918 ~ 7004379 (+) True CI01000018_06968918_07004161
CI01000018_06780816_06782576.mRNA mRNA upstream 227148 6779399 ~ 6783813 (+) True CI01000018_06780816_06782576
CI01000018_06774816_06776610.mRNA mRNA upstream 233912 6774816 ~ 6777049 (+) False CI01000018_06774816_06776610
CI01000018_06654341_06664818.mRNA mRNA upstream 346055 6654341 ~ 6664906 (+) True CI01000018_06654341_06664818
CI01000018_06624871_06636641.mRNA mRNA upstream 373987 6624871 ~ 6636974 (+) True CI01000018_06624871_06636641
CI01000018_07062582_07063654.mRNA mRNA downstream 17187 7062458 ~ 7063778 (+) False CI01000018_07062582_07063654
TU120967 other upstream 124636 6881611 ~ 6886325 (+) True G106429
TU119087 other upstream 1788345 5216680 ~ 5216958 (+) False G104753
TU118997 other upstream 2251193 4755801 ~ 4759768 (+) True G104670
TU118875 other upstream 2637549 4370186 ~ 4373412 (+) True CI01000018_04368179_04375192
TU118573 other upstream 3319442 3691089 ~ 3691519 (+) True G104258

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045627 True 6943 mRNA 0.43 27 NC_007135.7 25919809 ~ 25989500 (+)
bowfin (Amia calva) AMCG00016526 True 3851 mRNA 0.60 30 CM030122.1 24215947 ~ 24243375 (-)