RNA id: CI01000026_01241505_01244833.mRNA


Basic Information

Item Value
RNA id CI01000026_01241505_01244833.mRNA
length 2321
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000026_01241505_01244833
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1241505 ~ 1244833 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGAGCACCCAGCAATCTGCACAGGAATTCCTCGGAAATGGCCGAACTCTGCTAACTGAGGGACGTTTAAACTGTGATCCTTTAATTGAAGCCTTAATCCAGTGCAAATTCTTCATAAATCATGAGCTAAGTTCAATTGAGTCTGCAGAAAATAGTCAGGATAAGATAAGGATTTTGCTCGACATAGTTTTTTCTAAAGGAGAAGAAGCCTGCTATAAGTTTTTAAAAATTCTTGACAAAAAAAGATTTGAAGTATTTCCAAGACCTGTTTTGGGTGATCGGGATTTACATCACTGGATTAGCTGCTTCTCCTTCAAGGATGAACCACAATCTCAGACTGCAAACCTAGCAGACTTACTTATGAATGATGAGAAAAGCATCCTACTTGTGGGGAAACCTGGAGTGGGCAAGACAACAGTTGCACTAGAGATTCTTAGACTCTGGACTGAAGAGAAAAGCATTCCAGTGAGTTACATGTTTTATTTTGATGAGCCACTGATGAGAGTTTTCTCCCAGGATCCAAATCCTCATATGTTGAAGGATCTTATTTTTCACCATTACATATGCCCAGAAGAAGCATCAGATCAAGTTCTAGAAAATATTGAGAGCAATTCAGAAAATGTTGTACTCATTTTTGATGGTATCATGGATGTGACTGGAAACAACGTGATTAAGCAGCTCATGGGGAAAGAATTTTTGAAAGATGCCAAGGTCTTGACCACTTGCAGACCAGAAGCTGAGGATACAGGTTACCTGTCAGACTGGCCATCTTATCGAGTAGAGGTTCAGGGTTTTAGTCATGGGTCCATCTGTGAATACTTCAAATGGATGCTGGGAACAACGGATGACATTGGTCCTTTGAAAAACCCAGAGTTATTCAGTTTGTGCTCTGTACCATTGTATGCCTTTATAGTAACTGCCTGCATTTCAGTAAGTCCTGTTGAAGCCAGGAATAAGCCTTTTACAATTACGGAGATGTACGTCCAAATTTTTCGCTTTTGCATGAAACAACACGGGCACCAAAATGTGGAGCACTTAGATAAGTACATTACGGACAACAAAAGGGACATCATGAAATTAGCTCTAGCCTCCTATCAAGCAATGCTAGCAAGGACAGTGAACCTGACAGATTTGGATCATGAAGACAAGCCTGTGCAAAATGCTTTCTTGACAAAGCAATTGTGGAACCCATCCACAACCTCTTGCAAAGTGTATGCATTCCTTCATAATACAATGCAAGAGTTTTGGACAGCCCTCTTTCTAATTTTAAATCCTGACAAGATCACTAATGTGCTTGATCAATGTCACAGCGAAGAAGATGGAAAATACCTTAAATATATTATGCCATTTTTGTCTGGACTTCTCTCTGATAATCTAGTTGAGCTTATAAAGTGTTTGGTGCCAGTAGAACAGATAGAAGCTACACGTGCAGAGTACTTTCAACAGATTATTGACACTTTCCTTTACACTAAAGAACGGAATCAAGAAGGTGATTTCGAGCAGTTTGTGGACGTTGACAACATCCTGTTTGTGTGTCGATGTCTTTATGAGTATCAATCTCCTAAGGCATGCCTACTCTTCCTGGCAAAGGTTCAGTATGAGCTTGATTTAGAGGAACAAACCCTTGATCCCCACCAGTGCTGCATACTATCCTATGTGGTCAGTCAAACTATGCATCAGAATATTGATTTGAACCTCACAAATTGCAACATTTCTGACCCTGGGGTGAAATTACTTCTTGGCTCGTTGAAAAATCTTAAATTTCTCAGGTCAACAAGCAGCTTGCAGTCTCAAATGTGGAGAGTGGCTTTTGAAGCAGGACAGTTTTCAGATTTTGATAGCCTGCTTAGCTTATTCAGCTTTGAAATGCACCTCTATGCACATGAAACACAAGACCAGAAAGTGTTTCAAAGGATAGGAGAAGTCCTTAAAAAGAAGAGATCAGAAAGTGTTCATCTTTTCCTTCATGTAAATGAAAAACTCATAACTAGACCTTTGCAGAAGGCCATTTTTGAGAGCTTATCCAATATCGCAACCATTAGCAACAATCAAAGAGAAAACTTTGAGGAGCAGTGTAAATTTTTGCTAAATCTGCAAGAACATGGTAAGAACATGGATGTTCTTCCAGTTTTGCAACCTGTTTTTTATGCATTGCCAACCACATGGGTTGTACAGCCTTCAAACCCATCAATGTCACTGCTCTTCCAAACCATGGAAGCTCTAAATTTAAAGAAGCCCGCTGAACTAGATAATGTTCCATACACGCTGAGTGAACTTAAACTTTTTCTTCAGTATATGCCCTATGTTACAGAAATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144482 lncRNA downstream 215347 1018851 ~ 1026158 (-) False G127174
TU144481 lncRNA downstream 215347 1022767 ~ 1026158 (-) True G127174
TU144475 lncRNA downstream 246726 994521 ~ 994779 (-) True G127171
TU144453 lncRNA downstream 294675 945475 ~ 946830 (-) True G127152
TU144456 lncRNA downstream 298117 942761 ~ 943388 (-) False G127152
TU144573 lncRNA upstream 17357 1262190 ~ 1262404 (-) True G127240
TU144611 lncRNA upstream 143146 1387979 ~ 1388196 (-) True G127275
TU144614 lncRNA upstream 148574 1393407 ~ 1393608 (-) True G127278
TU144615 lncRNA upstream 154473 1399306 ~ 1400928 (-) True G127279
TU144619 lncRNA upstream 164097 1408930 ~ 1410546 (-) True G127282
CI01000026_01234036_01241404.mRNA mRNA downstream 101 1233603 ~ 1241404 (-) True CI01000026_01234036_01241404
CI01000026_01228438_01233086.mRNA mRNA downstream 8419 1228312 ~ 1233086 (-) True CI01000026_01228438_01233086
CI01000026_01220096_01224123.mRNA mRNA downstream 15546 1220096 ~ 1225959 (-) True CI01000026_01220096_01224123
CI01000026_01211595_01215959.mRNA mRNA downstream 25546 1211595 ~ 1215959 (-) True CI01000026_01211595_01215959
CI01000026_01159823_01161906.mRNA mRNA downstream 79599 1159162 ~ 1161906 (-) True CI01000026_01159823_01161906
CI01000026_01263538_01270706.mRNA mRNA upstream 18651 1263484 ~ 1270706 (-) True CI01000026_01263538_01270706
CI01000026_01341481_01348949.mRNA mRNA upstream 96300 1341133 ~ 1348949 (-) True CI01000026_01341481_01348949
CI01000026_01384408_01386103.mRNA mRNA upstream 139531 1384364 ~ 1386103 (-) True CI01000026_01384408_01386103
CI01000026_01433833_01436599.mRNA mRNA upstream 188987 1433820 ~ 1436599 (-) True CI01000026_01433833_01436599
CI01000026_01452548_01454060.mRNA mRNA upstream 207006 1451839 ~ 1454060 (-) True CI01000026_01452548_01454060
TU144310 other downstream 238916 999847 ~ 1002589 (-) True G127016
TU144773 other upstream 490944 1735777 ~ 1736106 (-) False G127418
TU146987 other upstream 2135952 3380785 ~ 3487020 (-) True G129357
TU147118 other upstream 2425741 3670574 ~ 3670884 (-) True G129476
TU147383 other upstream 3122463 4367296 ~ 4373069 (-) True G129658
TU147520 other upstream 3568217 4813050 ~ 4819282 (-) False G129750

Expression Profile