RNA id: CI01000026_01433833_01436599.mRNA


Basic Information

Item Value
RNA id CI01000026_01433833_01436599.mRNA
length 529
RNA type mRNA
GC content 0.50
exon number 4
gene id CI01000026_01433833_01436599
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1433820 ~ 1436599 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGGAAAGGGAAATACAGCAAGCACACTAAAACAGTGTAATAATTGCGATGGGGAGGGTCCCGTTATACACATCCACATGCATGAGGACACATTGGTTAACATCACCATGTTCCGCTGCGTAACATCTGACCTGGTAGTGCTTATGCTGCCTTTGGTTATGTTGGTGTTGCTAATGCCCTTCAGCTGGAGTTTTCAAGCCCTGACTCCTGGCTGCCACCTTTACCCATTTAACGTGACCATACGTACAGACAAGCGAGGGACATGTCGAGGAACTCAGATGGTGTACGCTTGTGTGGGCTACTGTGAGTCCAGCGCTTTCCCCTCACGCTACTCTGTGCTGCTGGCGTCCAATTTCACCCACAACATAACGTCTGCTTCCCGCTGCTGCACCATTAGCAAGGATGCCAAGATCAAAGTTCGTCTGCACTGTCCTCAAGGCCGTCACCATGATGATATCGAGATCTTGACTGCACGTGCCTGTCGGTGCAACATGTGTCACAAATCCCGTTACTGAGAGCCCACATAAA

Function

GO:

id name namespace
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144619 lncRNA downstream 23274 1408930 ~ 1410546 (-) True G127282
TU144615 lncRNA downstream 32892 1399306 ~ 1400928 (-) True G127279
TU144614 lncRNA downstream 40212 1393407 ~ 1393608 (-) True G127278
TU144611 lncRNA downstream 45624 1387979 ~ 1388196 (-) True G127275
TU144573 lncRNA downstream 171416 1262190 ~ 1262404 (-) True G127240
TU144632 lncRNA upstream 35084 1471683 ~ 1519199 (-) True G127294
TU144682 lncRNA upstream 133184 1569783 ~ 1569994 (-) True G127342
TU144683 lncRNA upstream 134275 1570874 ~ 1571089 (-) True G127343
TU144689 lncRNA upstream 136170 1572769 ~ 1573045 (-) True G127349
TU144690 lncRNA upstream 137167 1573766 ~ 1573972 (-) True G127350
CI01000026_01384408_01386103.mRNA mRNA downstream 47717 1384364 ~ 1386103 (-) True CI01000026_01384408_01386103
CI01000026_01341481_01348949.mRNA mRNA downstream 84871 1341133 ~ 1348949 (-) True CI01000026_01341481_01348949
CI01000026_01263538_01270706.mRNA mRNA downstream 163114 1263484 ~ 1270706 (-) True CI01000026_01263538_01270706
CI01000026_01241505_01244833.mRNA mRNA downstream 188987 1241505 ~ 1244833 (-) True CI01000026_01241505_01244833
CI01000026_01234036_01241404.mRNA mRNA downstream 192416 1233603 ~ 1241404 (-) True CI01000026_01234036_01241404
CI01000026_01452548_01454060.mRNA mRNA upstream 15240 1451839 ~ 1454060 (-) True CI01000026_01452548_01454060
CI01000026_01660894_01664126.mRNA mRNA upstream 223912 1660511 ~ 1665349 (-) True CI01000026_01660894_01664126
CI01000026_01855346_01933699.mRNA mRNA upstream 418085 1854684 ~ 1933699 (-) True CI01000026_01855346_01933699
CI01000026_02124326_02125256.mRNA mRNA upstream 687517 2124116 ~ 2125256 (-) True CI01000026_02124326_02125256
CI01000026_02267615_02268297.mRNA mRNA upstream 830703 2267302 ~ 2268335 (-) True CI01000026_02267615_02268297
TU144310 other downstream 431231 999847 ~ 1002589 (-) True G127016
TU144773 other upstream 299178 1735777 ~ 1736106 (-) False G127418
TU146987 other upstream 1944186 3380785 ~ 3487020 (-) True G129357
TU147118 other upstream 2233975 3670574 ~ 3670884 (-) True G129476
TU147383 other upstream 2930697 4367296 ~ 4373069 (-) True G129658
TU147520 other upstream 3376451 4813050 ~ 4819282 (-) False G129750

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067594 True 1263 mRNA 0.36 3 NC_007118.7 25109700 ~ 25112402 (-)