RNA id: TCONS_00067594


Basic Information

Item Value
RNA id TCONS_00067594
length 1263
RNA type mRNA
GC content 0.36
exon number 3
gene id XLOC_034731
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25109700 ~ 25112402 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTCGTTGTGTATCTTCTGATCTGGCAGTGCTTCTGCTGGTGCTGCTAATGCCGATTAGCTGGAGTATTCAAACCCTGACTCCTGGCTGCCACCTTTACCCATTTAACGTGACGGTACGGACTGACAAGAGGGGGACATGCCGAGGAACCCAACTGGTGTACGCGTGTGTGGGATACTGCGAGTCCAGCGCTTTCCCCTCGCGGTACTCAGTGCTGCTCGCGTCCAATTTCACCCACAACATCACTTCCTCCTCCCGCTGCTGCACCATCAGCAAAGACGCCAAGGTTAAAATTCGTCTTCACTGTCCTCGAGGGCGCCATCATGCTGATATGGAGATCCTGTCTGCGCGGGCCTGTCGCTGCAGCATGTGCCACAAATCCCGATACTGACAAACAAATAACGAAGAATGatgtacaattataaaagtatgcggctttgatttaaataatttcagattttacagcttttatttgtctataaatacatttttttacttatttcatttcattaaatTCACTTGACTACTATTGAGAAGTTTGGGGccatgaagatttttttaaaaagacactaattatgctagttaatgcattaaatgaaatgtattacatttagtgaagattataaaacatttatattttactgtatgtaGCTATTGCTTTATTAttctgtaaactgctgatatcaatggttttcaatttaaaataagttgtcatttaggGCATATTATTACAAAATGTCATTAGAATTGTAGAATGAAACAATAGAAACCAGACTGAACTCAAAcccataaataataaatgcagaGAAAATAGGATTTTTCAAGtgatctctattttttttttttttcaatggaaagattaagtttttttttttttttttaagtaccaaTAACATGGACGATTGcactgtatttttaatcaaatgcaGAGTTGGATATACATttcaaaagctaaaaataaaaatcactcaaACCCCAAACTTCTGGCATGATAAAAATAACTCGTATACTTTTCTCTGCTCTAACATGATAGCATGAgtgacattttttcatatgtagtCTAAAGACAGAACGTACATAACTACATGCATCAATTTAATAGAAGACAATGGCAAATACCATCAGATACACTTTTCTGAAAAACACTACTCTAATGTCGCTGCCACCTGATGACAAAGAATGTATCTTTCGTATTATGTATTTATAAGATGATGTTTGCACAAAATGTGTctaatctttttaaataaaagagtaCATGACT

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0051427 hormone receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091029-1 Predicted to enable hormone receptor binding activity. Predicted to be involved in cell surface receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human GPHA2 (glycoprotein hormone subunit alpha 2).

Ensembl:

ensembl_id ENSDART00000111619

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067593 lncRNA downstream 60326 25047617 ~ 25049374 (-) True XLOC_034730
TCONS_00067592 lncRNA downstream 60330 25047617 ~ 25049370 (-) False XLOC_034730
TCONS_00069207 lncRNA downstream 114978 24989959 ~ 24994722 (-) True XLOC_034729
TCONS_00067587 lncRNA downstream 124306 24984362 ~ 24985394 (-) False XLOC_034729
TCONS_00067571 lncRNA downstream 488004 24593262 ~ 24621696 (-) True XLOC_034721
TCONS_00067601 lncRNA upstream 227354 25339756 ~ 25523412 (-) False XLOC_034735
TCONS_00067602 lncRNA upstream 296754 25409156 ~ 25523467 (-) False XLOC_034735
TCONS_00067603 lncRNA upstream 357800 25470202 ~ 25523421 (-) False XLOC_034735
TCONS_00067604 lncRNA upstream 358060 25470462 ~ 25523390 (-) True XLOC_034735
TCONS_00069208 lncRNA upstream 876012 25988414 ~ 25995689 (-) True XLOC_034742
TCONS_00067591 mRNA downstream 60323 25047219 ~ 25049377 (-) False XLOC_034730
TCONS_00067588 mRNA downstream 114060 24984658 ~ 24995640 (-) False XLOC_034729
TCONS_00067590 mRNA downstream 114069 24984813 ~ 24995631 (-) False XLOC_034729
TCONS_00067589 mRNA downstream 114978 24984685 ~ 24994722 (-) False XLOC_034729
TCONS_00067586 mRNA downstream 115132 24979833 ~ 24994568 (-) False XLOC_034729
TCONS_00067595 mRNA upstream 7824 25120226 ~ 25126212 (-) True XLOC_034732
TCONS_00067596 mRNA upstream 17118 25129520 ~ 25133853 (-) False XLOC_034733
TCONS_00067597 mRNA upstream 17120 25129522 ~ 25133814 (-) False XLOC_034733
TCONS_00067598 mRNA upstream 17400 25129802 ~ 25133783 (-) False XLOC_034733
TCONS_00067599 mRNA upstream 17818 25130220 ~ 25132592 (-) True XLOC_034733
TCONS_00067584 other downstream 255802 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067552 other downstream 916620 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067518 other downstream 2172452 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 3272834 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 3278850 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067600 other upstream 178631 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 650782 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 678827 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067631 other upstream 1188393 26300795 ~ 26304876 (-) False XLOC_034753
TCONS_00067641 other upstream 1333618 26446020 ~ 26457812 (-) False XLOC_034760

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_01433833_01436599.mRNA True 529 mRNA 0.50 4 CI01000026 1433820 ~ 1436599 (-)