RNA id: TCONS_00067598


Basic Information

Item Value
RNA id TCONS_00067598
length 999
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_034733
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25129520 ~ 25133853 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCACGCAAGACGGTAGGTAACTACTGCATTCCGTAGGTAACTCGATAGTTGAAATATCTGtaattgaataaaacaaaacaaaaaatcgaCGCTAAAAGCATTACAACTCAGGACTGAAAACTCAAAAAttcaaTCATGGCACATATGTTTAATATCTCTGATGATTCAGAGACAGAAACAATGGAAGACAGTGAAGACTCAAGCCTGGATAAACACAAGAGTGGGTCGGCACAGAAAAAGCAGCACCTCACTGTTCCTGATAGGCTGAAAGGAGAGCAACTGGGCAGACAGAGGAACCTCTCGATGAATGAGGAGGACTTGCTGGAAACTGGAGTTGCAGAAGATCCTCATATGCTTGGGGATCCTTTCAGGCCGAGATCCCGCTCAGCTCCTCCTGCTTTGTGGGCAGCTAAGAAATACGGCCAACAGCTGAGAAGAATGAGTGATGAGTTTGATAAAGGGATGAAGAGAGTAAAAAGTGCAGGAACTGCGCGTCAGATGAGTCAATCGCCCAGCTGGTTGGCATTTCTTTGGAGTCACAAAGAGTCTGATGCGGAGTCGCGCCCCGCAGAGTGACTGACAGTGAATGACTGATGGATGAAGACAGAAAAGAGAACTACTGTACATAACAATTGATGGCAGAAAATAAGGGTGCTCTGCTTTGAACAGAAGACATAATTCCACTGACTGGTTCTAAAGTCAGGAGCTGCACTGGGACCCTTGACTATTGAATAAGGCATGATCTGTTTCTCACTGGCAAGTGCAATGGCCACGAAGACAACAAAATGGATTTCCTCAAGCTCTGGGATTATTATGCAGTAAATTTTATAAATGCGAATGTAAACTTGCGCAAAGCACAGACTTTCTTTCAATCTGCCGTATCGGTTTTAAGATGAAATATGTTCCAAtacataaacattaaaaacattagatATCATATCTAACCGTATTTTAGACAGTCAGCTGTACAAAATCTGGTTTTACTGTGAAGGACCT

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0071479 cellular response to ionizing radiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-000616-1 Acts upstream of or within cellular response to ionizing radiation and positive regulation of apoptotic process. Located in mitochondrion. Is expressed in several structures, including brain; heart; hindbrain neural plate; midbrain hindbrain boundary neural keel; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in endometrial cancer; lung non-small cell carcinoma; and pancreatic cancer. Orthologous to human BAD (BCL2 associated agonist of cell death).

Ensembl:

ensembl_id ENSDART00000173781

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067593 lncRNA downstream 80428 25047617 ~ 25049374 (-) True XLOC_034730
TCONS_00067592 lncRNA downstream 80432 25047617 ~ 25049370 (-) False XLOC_034730
TCONS_00069207 lncRNA downstream 135080 24989959 ~ 24994722 (-) True XLOC_034729
TCONS_00067587 lncRNA downstream 144408 24984362 ~ 24985394 (-) False XLOC_034729
TCONS_00067571 lncRNA downstream 508106 24593262 ~ 24621696 (-) True XLOC_034721
TCONS_00067601 lncRNA upstream 205973 25339756 ~ 25523412 (-) False XLOC_034735
TCONS_00067602 lncRNA upstream 275373 25409156 ~ 25523467 (-) False XLOC_034735
TCONS_00067603 lncRNA upstream 336419 25470202 ~ 25523421 (-) False XLOC_034735
TCONS_00067604 lncRNA upstream 336679 25470462 ~ 25523390 (-) True XLOC_034735
TCONS_00069208 lncRNA upstream 854631 25988414 ~ 25995689 (-) True XLOC_034742
TCONS_00067595 mRNA downstream 3590 25120226 ~ 25126212 (-) True XLOC_034732
TCONS_00067594 mRNA downstream 17400 25109700 ~ 25112402 (-) True XLOC_034731
TCONS_00067591 mRNA downstream 80425 25047219 ~ 25049377 (-) False XLOC_034730
TCONS_00067590 mRNA downstream 134171 24984813 ~ 24995631 (-) False XLOC_034729
TCONS_00067589 mRNA downstream 135080 24984685 ~ 24994722 (-) False XLOC_034729
TCONS_00067605 mRNA upstream 424492 25558275 ~ 25693760 (-) False XLOC_034736
TCONS_00067606 mRNA upstream 424492 25558275 ~ 25697285 (-) True XLOC_034736
TCONS_00067609 mRNA upstream 744770 25878553 ~ 25895227 (-) False XLOC_034739
TCONS_00067611 mRNA upstream 744770 25878553 ~ 25895354 (-) False XLOC_034739
TCONS_00067610 mRNA upstream 744770 25878553 ~ 25895354 (-) False XLOC_034739
TCONS_00067584 other downstream 275904 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067552 other downstream 936722 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067518 other downstream 2192554 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 3292936 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 3298952 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067600 other upstream 157250 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 629401 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 657446 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067631 other upstream 1167012 26300795 ~ 26304876 (-) False XLOC_034753
TCONS_00067641 other upstream 1312237 26446020 ~ 26457812 (-) False XLOC_034760

Expression Profile

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